Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   V7S31_RS19105 Genome accession   NZ_CP147655
Coordinates   3875035..3876180 (+) Length   381 a.a.
NCBI ID   WP_338816584.1    Uniprot ID   -
Organism   Bacillus velezensis strain M1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3870035..3881180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS19085 - 3870932..3871360 (-) 429 WP_007407634.1 DUF1934 domain-containing protein -
  V7S31_RS19090 - 3871514..3872026 (+) 513 Protein_3699 bacteriocin biosynthesis protein AlbG -
  V7S31_RS19095 - 3872033..3873409 (-) 1377 WP_072589671.1 YncE family protein -
  V7S31_RS19100 - 3873449..3874804 (-) 1356 WP_072589672.1 YncE family protein -
  V7S31_RS19105 rapF 3875035..3876180 (+) 1146 WP_338816584.1 tetratricopeptide repeat protein Regulator
  V7S31_RS19110 phrF 3876164..3876283 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  V7S31_RS19115 - 3876480..3876683 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  V7S31_RS19120 - 3876697..3876900 (+) 204 WP_007407641.1 hypothetical protein -
  V7S31_RS19125 - 3876935..3877120 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  V7S31_RS19130 - 3877306..3877587 (+) 282 WP_007407643.1 hypothetical protein -
  V7S31_RS19135 - 3877631..3878143 (+) 513 WP_338816585.1 stage II sporulation protein M -
  V7S31_RS19140 - 3878734..3878952 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  V7S31_RS19145 speB 3879120..3879992 (-) 873 WP_007614448.1 agmatinase -
  V7S31_RS19150 speE 3880051..3880881 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45601.68 Da        Isoelectric Point: 4.6084

>NTDB_id=947900 V7S31_RS19105 WP_338816584.1 3875035..3876180(+) (rapF) [Bacillus velezensis strain M1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
IDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFYFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=947900 V7S31_RS19105 WP_338816584.1 3875035..3876180(+) (rapF) [Bacillus velezensis strain M1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCAGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATTGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCACAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGATTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATTATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGTCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTTACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(190-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

77.953

100

0.78
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567