Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8953_RS03055 Genome accession   NZ_AP028409
Coordinates   612392..612886 (-) Length   164 a.a.
NCBI ID   WP_002786475.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11999     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 607392..617886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8953_RS03040 (I11999_06020) metE 608013..610277 (-) 2265 WP_002781301.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8953_RS03045 (I11999_06030) - 610300..611070 (-) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8953_RS03050 (I11999_06040) - 611084..612076 (-) 993 WP_002788130.1 isopenicillin N synthase family oxygenase -
  R8953_RS03055 (I11999_06050) luxS 612392..612886 (-) 495 WP_002786475.1 S-ribosylhomocysteine lyase Regulator
  R8953_RS03060 (I11999_06060) gatB 613001..614419 (+) 1419 WP_002786474.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8953_RS03065 (I11999_06070) - 614419..615318 (+) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8953_RS03070 (I11999_06080) - 615327..616508 (+) 1182 WP_023890656.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.19 Da        Isoelectric Point: 5.0135

>NTDB_id=94789 R8953_RS03055 WP_002786475.1 612392..612886(-) (luxS) [Campylobacter coli strain IDH-11999]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGIMNNEELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94789 R8953_RS03055 WP_002786475.1 612392..612886(-) (luxS) [Campylobacter coli strain IDH-11999]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCGCCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCTGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATATTTTAAATGTGAGCGATCAAAGTCAAATTCCTGAACTCAATATCTATCAATGTGGAACTTGTGCTATGC
ATTCTTTGGATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTACCATAGGCATAATGAACAACGAAGAATTAAAA
CTTGAAAATATCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

71.429

98.171

0.701

Multiple sequence alignment