Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   V7S31_RS11810 Genome accession   NZ_CP147655
Coordinates   2430499..2431107 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain M1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2425499..2436107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS11770 - 2426552..2427058 (-) 507 WP_007409495.1 PTS glucose transporter subunit IIA -
  V7S31_RS11775 - 2427197..2427610 (+) 414 WP_017418017.1 hypothetical protein -
  V7S31_RS11780 - 2427640..2428074 (-) 435 WP_032866289.1 YppG family protein -
  V7S31_RS11785 - 2428261..2428443 (+) 183 WP_003153532.1 YppF family protein -
  V7S31_RS11790 - 2428482..2428850 (-) 369 WP_007409492.1 YppE family protein -
  V7S31_RS11795 - 2428896..2429141 (-) 246 WP_007409491.1 DUF5446 family protein -
  V7S31_RS11800 sspM 2429347..2429451 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  V7S31_RS11805 - 2429495..2430457 (-) 963 WP_108724853.1 DUF2515 domain-containing protein -
  V7S31_RS11810 recU 2430499..2431107 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  V7S31_RS11815 - 2431146..2433929 (+) 2784 WP_253600139.1 PBP1A family penicillin-binding protein -
  V7S31_RS11820 - 2434007..2434498 (-) 492 WP_338816328.1 YpoC family protein -
  V7S31_RS11825 nth 2434495..2435154 (-) 660 WP_007612187.1 endonuclease III -
  V7S31_RS11830 dnaD 2435173..2435871 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=947866 V7S31_RS11810 WP_012117837.1 2430499..2431107(+) (recU) [Bacillus velezensis strain M1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=947866 V7S31_RS11810 WP_012117837.1 2430499..2431107(+) (recU) [Bacillus velezensis strain M1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891