Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V7S31_RS08760 Genome accession   NZ_CP147655
Coordinates   1683522..1683806 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain M1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678522..1688806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS08740 - 1679765..1680673 (+) 909 WP_039063006.1 ketopantoate reductase family protein -
  V7S31_RS08745 - 1680705..1681937 (-) 1233 WP_039063007.1 aminopeptidase -
  V7S31_RS08750 - 1682038..1682172 (-) 135 WP_003154559.1 protein YkpC -
  V7S31_RS08755 mreBH 1682244..1683251 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  V7S31_RS08760 abrB 1683522..1683806 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  V7S31_RS08765 - 1683979..1685283 (+) 1305 WP_039063008.1 ATP-binding protein -
  V7S31_RS08770 - 1685285..1686112 (+) 828 WP_039063009.1 gamma-glutamylcyclotransferase family protein -
  V7S31_RS08775 ktrC 1686153..1686818 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  V7S31_RS08780 ade 1686967..1688700 (+) 1734 WP_039063010.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=947860 V7S31_RS08760 WP_003154557.1 1683522..1683806(+) (abrB) [Bacillus velezensis strain M1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=947860 V7S31_RS08760 WP_003154557.1 1683522..1683806(+) (abrB) [Bacillus velezensis strain M1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543