Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   V7S31_RS01600 Genome accession   NZ_CP147655
Coordinates   324945..325235 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain M1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 319945..330235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS01560 darA 319960..320289 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  V7S31_RS01565 - 320302..320742 (+) 441 WP_004264730.1 DUF327 family protein -
  V7S31_RS01570 holB 320754..321743 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  V7S31_RS01575 ricT 321746..322573 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  V7S31_RS01580 yabA 322588..322947 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  V7S31_RS01585 - 323008..323751 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V7S31_RS01590 - 323738..324037 (+) 300 WP_038456669.1 GIY-YIG nuclease family protein -
  V7S31_RS01595 rsmI 324012..324893 (+) 882 WP_039062436.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  V7S31_RS01600 abrB 324945..325235 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  V7S31_RS01605 metG 325719..327710 (+) 1992 WP_020955208.1 methionine--tRNA ligase -
  V7S31_RS01610 - 327786..328553 (+) 768 WP_039062437.1 TatD family hydrolase -
  V7S31_RS01615 - 328688..330013 (+) 1326 WP_103715924.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=947831 V7S31_RS01600 WP_169510469.1 324945..325235(-) (abrB) [Bacillus velezensis strain M1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=947831 V7S31_RS01600 WP_169510469.1 324945..325235(-) (abrB) [Bacillus velezensis strain M1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979