Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V7R88_RS08595 Genome accession   NZ_CP147647
Coordinates   1835331..1837142 (-) Length   603 a.a.
NCBI ID   WP_057717531.1    Uniprot ID   -
Organism   Lactiplantibacillus argentoratensis strain D1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1830331..1842142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R88_RS08570 - 1830954..1831592 (+) 639 WP_057717458.1 copper homeostasis protein CutC -
  V7R88_RS08575 - 1831843..1832745 (-) 903 WP_338816144.1 RluA family pseudouridine synthase -
  V7R88_RS08580 - 1832742..1833545 (-) 804 WP_054397414.1 NAD kinase -
  V7R88_RS08585 - 1833542..1834204 (-) 663 WP_054397417.1 GTP pyrophosphokinase family protein -
  V7R88_RS08590 - 1834495..1835130 (+) 636 WP_054397419.1 DsbA family protein -
  V7R88_RS08595 pepF 1835331..1837142 (-) 1812 WP_057717531.1 oligoendopeptidase F Regulator
  V7R88_RS08600 - 1837220..1838305 (-) 1086 WP_072535355.1 competence protein CoiA family protein -
  V7R88_RS08605 - 1838478..1839206 (-) 729 WP_057717529.1 adaptor protein MecA -
  V7R88_RS08610 spxA 1839342..1839740 (-) 399 WP_011101690.1 transcriptional regulator SpxA -
  V7R88_RS08615 - 1840027..1840770 (-) 744 WP_057717528.1 MBL fold metallo-hydrolase -
  V7R88_RS08620 - 1840911..1841411 (+) 501 WP_054397432.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67721.85 Da        Isoelectric Point: 5.1458

>NTDB_id=947819 V7R88_RS08595 WP_057717531.1 1835331..1837142(-) (pepF) [Lactiplantibacillus argentoratensis strain D1]
MVATKQLPTRSAVPEELTWDLTPIYADQAAYEADVAQVKAAIPTVSALKEDFTSSADTVLAGIQAVLALYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILQLTPGELDTYLDENVDLRDYRHLLDTVRLQKGHVLSENEEA
LLAGAGDIFGASAKTFGVLNNADFQFPTVKDDDGNPVKLSQGIYGVLLESVHPAVRREAFEALYKVYGQFRRTLASTLAS
QVKVHNFVATAHHYPDARTAALAANQIPTTVYDSLVTSVDKHLDLLHRYVALRKQLLGVDQLHMYDMYTPLAPKPTTNYT
YQQAQSTALQALKILGPDYLKHVKTAFASRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHHQPYQYGDYSIFVAEIASTTNENLLTNYFLATEQDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWLHEQDQEGQ
ALTADRLSKHYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLADRISTKQPGAVDDYLGYLKAG
SSAFPIDVMHRAGVDMTKSDYLDAAFKVFEERLDEFEQLVTRK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=947819 V7R88_RS08595 WP_057717531.1 1835331..1837142(-) (pepF) [Lactiplantibacillus argentoratensis strain D1]
ATGGTAGCAACCAAACAATTGCCGACCCGGTCGGCTGTTCCTGAAGAATTGACATGGGATTTGACACCGATTTATGCTGA
TCAGGCTGCATATGAGGCGGATGTCGCGCAAGTTAAAGCGGCAATCCCCACCGTTAGTGCGCTCAAAGAAGATTTTACAA
GCTCGGCCGACACGGTGTTGGCAGGCATTCAGGCCGTCTTAGCTTTGTATCGTCGCCTAGAGAAGGTGGCGGTCTATGCG
AGTTTGAAAAGTGATCAGGATACTGGAAATAGTACCAACGCTGCTTTGGATGACCAAGCTAGTAGTTTAACCGCCAAAGT
GTCCGCTGCAACTGCCTGGTTTGAACCGGCAATCTTACAGTTAACGCCGGGCGAATTAGATACGTATCTTGATGAAAACG
TCGATTTACGTGATTACCGGCACTTGTTGGATACGGTTCGCTTACAAAAGGGCCACGTTCTATCTGAGAACGAAGAAGCC
TTACTTGCCGGAGCTGGCGATATTTTTGGGGCTTCCGCGAAGACTTTTGGTGTGTTGAATAACGCTGACTTTCAATTTCC
GACGGTGAAGGATGACGACGGTAACCCTGTCAAATTGTCGCAAGGCATTTATGGCGTGCTGCTTGAGTCCGTTCATCCGG
CCGTTCGGCGTGAGGCATTTGAGGCGCTATATAAAGTGTATGGGCAATTTCGACGGACGCTCGCGTCGACGTTAGCTAGC
CAAGTCAAGGTGCATAATTTCGTCGCTACGGCGCACCACTATCCGGATGCACGAACGGCGGCACTTGCGGCCAATCAGAT
TCCGACAACGGTCTATGATTCCTTAGTCACGTCTGTTGACAAGCACTTAGATCTGTTACACCGTTACGTTGCCTTACGAA
AGCAGTTGCTCGGTGTTGATCAGTTGCATATGTATGATATGTATACGCCTTTGGCACCTAAGCCGACGACCAATTATACC
TATCAACAGGCCCAATCGACTGCCTTACAAGCCCTCAAAATTTTGGGACCTGATTATCTAAAACACGTCAAAACAGCGTT
TGCTTCGCGGTGGATCGATGTGGTGGAAAACCAAGGCAAACGTAGCGGGGCGTATTCGTCTGGAATGTACGATACTGCGC
CGTATATGCTGTTGAACTGGCAGGATAATATTGATAATTTATACACGTTGGTGCACGAAATGGGGCACAGTATGCATTCA
TACTTCACGACGCATCATCAACCTTATCAATATGGTGATTATTCAATTTTTGTGGCGGAAATTGCGTCAACGACTAATGA
AAACTTATTGACGAACTATTTCTTAGCAACTGAGCAAGATCCAAAAATGCGAGCGTACGTCTTGAACTACTACTTGGATG
GCTTTAAGGGCACTGTTTTCCGGCAGACGCAATTTGCTGAGTTCGAACAGTGGCTTCATGAGCAAGATCAAGAAGGTCAG
GCCTTGACTGCGGATCGCTTATCAAAACATTATTTACAGTTGAACCAACGTTACTATGGTGATGCCGTCGTCAGTGATCC
ACAAATTGCTGATGAATGGTCTCGGATCCCACACTTCTATTACAATTATTATGTTTATCAATACGCTACGGGCTTCGCAG
CGGCATCCACGCTAGCCGACCGTATCAGTACGAAACAGCCTGGTGCCGTTGATGATTACCTCGGCTATTTGAAAGCCGGT
TCATCAGCGTTCCCAATCGATGTCATGCATCGCGCGGGGGTTGACATGACTAAGTCAGATTATTTGGACGCAGCCTTTAA
GGTATTTGAAGAACGGCTAGACGAGTTCGAACAACTGGTCACCCGAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.189

98.507

0.514