Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8622_RS06640 Genome accession   NZ_AP028408
Coordinates   1290095..1291063 (+) Length   322 a.a.
NCBI ID   WP_002869322.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-11860     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285095..1296063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS06615 (I11860_13010) cdsA 1286004..1286729 (-) 726 WP_052802478.1 phosphatidate cytidylyltransferase -
  R8622_RS06620 (I11860_13020) - 1286738..1287076 (-) 339 WP_002852397.1 hypothetical protein -
  R8622_RS06625 (I11860_13030) - 1287078..1288385 (-) 1308 WP_002853936.1 NFACT RNA binding domain-containing protein -
  R8622_RS06630 (I11860_13040) mobA 1288448..1289023 (+) 576 WP_002853737.1 molybdenum cofactor guanylyltransferase -
  R8622_RS06635 (I11860_13050) pldA 1289020..1290009 (+) 990 WP_317648244.1 phospholipase A -
  R8622_RS06640 (I11860_13060) ceuB 1290095..1291063 (+) 969 WP_002869322.1 ABC transporter permease Machinery gene
  R8622_RS06645 (I11860_13070) ceuC 1291056..1291994 (+) 939 WP_038816948.1 iron chelate uptake ABC transporter family permease subunit -
  R8622_RS06650 (I11860_13080) ceuD 1291991..1292746 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  R8622_RS06655 (I11860_13090) ceuB 1292759..1293751 (+) 993 WP_038816949.1 enterochelin ABC transporter substrate-binding protein CeuB -
  R8622_RS06665 (I11860_13100) - 1293977..1294531 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35397.29 Da        Isoelectric Point: 9.6678

>NTDB_id=94757 R8622_RS06640 WP_002869322.1 1290095..1291063(+) (ceuB) [Campylobacter jejuni strain IDH-11860]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=94757 R8622_RS06640 WP_002869322.1 1290095..1291063(+) (ceuB) [Campylobacter jejuni strain IDH-11860]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTTACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATTCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment