Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WCU17_RS10550 Genome accession   NZ_CP147618
Coordinates   2225340..2225975 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain GN04844     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2220340..2230975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU17_RS10535 (WCU17_10535) - 2221046..2222290 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  WCU17_RS10540 (WCU17_10540) - 2222378..2222911 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  WCU17_RS10545 (WCU17_10545) comA 2223042..2225267 (+) 2226 WP_058342849.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WCU17_RS10550 (WCU17_10550) exbB 2225340..2225975 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WCU17_RS10555 (WCU17_10555) - 2225972..2226412 (+) 441 WP_017001503.1 biopolymer transporter ExbD -
  WCU17_RS10560 (WCU17_10560) lpxK 2226412..2227410 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  WCU17_RS10565 (WCU17_10565) - 2227448..2227633 (+) 186 WP_003091157.1 Trm112 family protein -
  WCU17_RS10570 (WCU17_10570) kdsB 2227633..2228397 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WCU17_RS10575 (WCU17_10575) - 2228397..2228861 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  WCU17_RS10580 (WCU17_10580) murB 2228858..2229877 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=947556 WCU17_RS10550 WP_003091163.1 2225340..2225975(+) (exbB) [Pseudomonas aeruginosa strain GN04844]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=947556 WCU17_RS10550 WP_003091163.1 2225340..2225975(+) (exbB) [Pseudomonas aeruginosa strain GN04844]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACTGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81