Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8622_RS05885 Genome accession   NZ_AP028408
Coordinates   1135626..1136120 (+) Length   164 a.a.
NCBI ID   WP_002857890.1    Uniprot ID   Q9PN97
Organism   Campylobacter jejuni strain IDH-11860     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1130626..1141120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS05870 (I11860_11540) - 1132012..1133190 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  R8622_RS05875 (I11860_11550) gpsA 1133200..1134096 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8622_RS05880 (I11860_11560) gatB 1134093..1135511 (-) 1419 WP_002858123.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8622_RS05885 (I11860_11570) luxS 1135626..1136120 (+) 495 WP_002857890.1 S-ribosylhomocysteine lyase Regulator
  R8622_RS05890 (I11860_11580) - 1136432..1137424 (+) 993 WP_002858100.1 isopenicillin N synthase family dioxygenase -
  R8622_RS05895 (I11860_11590) - 1137435..1138205 (+) 771 WP_002857994.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8622_RS05900 (I11860_11600) metE 1138217..1140481 (+) 2265 WP_052854632.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18209.18 Da        Isoelectric Point: 6.6314

>NTDB_id=94749 R8622_RS05885 WP_002857890.1 1135626..1136120(+) (luxS) [Campylobacter jejuni strain IDH-11860]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSIAKAWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94749 R8622_RS05885 WP_002857890.1 1135626..1136120(+) (luxS) [Campylobacter jejuni strain IDH-11860]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTATTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTCGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCTGATGAGAAAAGTATTGCAAAAGCTTGGGAAGCAGC
CATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTACCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAAGTTTTAAATCTAGGTATTAGCATAATAAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PN97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment