Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8622_RS03140 Genome accession   NZ_AP028408
Coordinates   604620..605003 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain IDH-11860     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 599620..610003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8622_RS03120 (I11860_06190) - 599699..601633 (-) 1935 WP_002895855.1 RNB domain-containing ribonuclease -
  R8622_RS03125 (I11860_06200) ilvC 601752..602774 (+) 1023 WP_317648550.1 ketol-acid reductoisomerase -
  R8622_RS03130 (I11860_06210) - 602778..603860 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  R8622_RS03135 (I11860_06220) dprA 603850..604623 (+) 774 WP_002858613.1 DNA-processing protein DprA Machinery gene
  R8622_RS03140 (I11860_06230) dprB 604620..605003 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  R8622_RS03145 (I11860_06240) - 605032..605871 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8622_RS03150 (I11860_06250) msrA 606047..606544 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8622_RS03155 (I11860_06260) ppa 606586..607104 (-) 519 WP_002895852.1 inorganic diphosphatase -
  R8622_RS03160 (I11860_06270) adk 607114..607692 (-) 579 WP_002859580.1 adenylate kinase -
  R8622_RS03165 (I11860_06280) aspS 607689..609440 (-) 1752 WP_002895850.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=94735 R8622_RS03140 WP_002858579.1 604620..605003(+) (dprB) [Campylobacter jejuni strain IDH-11860]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=94735 R8622_RS03140 WP_002858579.1 604620..605003(+) (dprB) [Campylobacter jejuni strain IDH-11860]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment