Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8567_RS03055 Genome accession   NZ_AP028407
Coordinates   597471..597965 (-) Length   164 a.a.
NCBI ID   WP_002807365.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11847     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 592471..602965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8567_RS03040 (I11847_05910) metE 593091..595355 (-) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8567_RS03045 (I11847_05920) - 595378..596148 (-) 771 WP_317646675.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8567_RS03050 (I11847_05930) - 596162..597154 (-) 993 WP_002807373.1 isopenicillin N synthase family oxygenase -
  R8567_RS03055 (I11847_05940) luxS 597471..597965 (-) 495 WP_002807365.1 S-ribosylhomocysteine lyase Regulator
  R8567_RS03060 (I11847_05950) gatB 598080..599498 (+) 1419 WP_317646679.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8567_RS03065 (I11847_05960) - 599498..600397 (+) 900 WP_002777349.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8567_RS03070 (I11847_05970) - 600406..601587 (+) 1182 WP_002788131.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18314.25 Da        Isoelectric Point: 6.3290

>NTDB_id=94698 R8567_RS03055 WP_002807365.1 597471..597965(-) (luxS) [Campylobacter coli strain IDH-11847]
MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEASMKDVLNVSDQNKIPELNIYQCGTCAMHSLNEAKEIAQKVLNSSIGVMNNKELK
LENI

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94698 R8567_RS03055 WP_002807365.1 597471..597965(-) (luxS) [Campylobacter coli strain IDH-11847]
ATGCCATTACTTGATAGTTTTAAAGTAGATCATACCAAAATGCCAGCACCCGCTGTGCGTTTAGCTAAAACAATGAAGAC
ACCAAAAGGCGATGATATTAGCGTATTTGACTTGCGTTTTTGCATACCCAATAAAGACATCATGAGTGAAAAAGGTACGC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGATCATTTAAATTCGGATTTGGTTGAAATCATCGACATTTCACCT
ATGGGATGTCGCACAGGTTTTTATATGAGTTTAATTGGCACACCGGATGAAAAAAGTGTTGCTAAAGCTTGGGAAGCCTC
AATGAAAGATGTTTTAAATGTAAGCGATCAAAACAAAATTCCTGAACTCAATATCTATCAATGCGGAACTTGTGCTATGC
ATTCCTTAAATGAAGCAAAAGAAATTGCACAAAAAGTTTTAAATTCTAGTATAGGTGTGATGAATAATAAAGAATTAAAA
CTTGAAAATATTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment