Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   WCU20_RS24220 Genome accession   NZ_CP147541
Coordinates   5205304..5205861 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain GN06288     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5200304..5210861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU20_RS24200 (WCU20_24200) pilR 5201580..5202917 (+) 1338 WP_338877629.1 two-component system response regulator PilR Regulator
  WCU20_RS24205 (WCU20_24205) thiO 5202963..5204057 (-) 1095 WP_031673552.1 glycine oxidase ThiO -
  WCU20_RS24210 (WCU20_24210) - 5204192..5204701 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  WCU20_RS24215 (WCU20_24215) - 5204807..5205313 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  WCU20_RS24220 (WCU20_24220) pilV 5205304..5205861 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  WCU20_RS24225 (WCU20_24225) pilW 5205858..5206682 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  WCU20_RS24230 (WCU20_24230) pilX 5206679..5207266 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  WCU20_RS24235 (WCU20_24235) pilY1 5207278..5210769 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=946845 WCU20_RS24220 WP_003119423.1 5205304..5205861(+) (pilV) [Pseudomonas aeruginosa strain GN06288]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=946845 WCU20_RS24220 WP_003119423.1 5205304..5205861(+) (pilV) [Pseudomonas aeruginosa strain GN06288]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995