Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   R8567_RS01690 Genome accession   NZ_AP028407
Coordinates   331599..332195 (+) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain IDH-11847     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326599..337195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8567_RS01675 (I11847_03200) ctsR 329306..329617 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8567_RS01680 (I11847_03210) ctsD 329595..331013 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8567_RS01685 (I11847_03220) ctsP 331006..331602 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  R8567_RS01690 (I11847_03230) ctsX 331599..332195 (+) 597 WP_002779313.1 CDC27 family protein Machinery gene
  R8567_RS01695 (I11847_03240) ctsE 332188..333750 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  R8567_RS01700 (I11847_03250) ctsF 333737..334912 (+) 1176 WP_317646417.1 type II secretion system F family protein Machinery gene
  R8567_RS01705 (I11847_03260) - 334909..335673 (-) 765 WP_002781157.1 TSUP family transporter -
  R8567_RS01710 (I11847_03270) - 335676..336440 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=94683 R8567_RS01690 WP_002779313.1 331599..332195(+) (ctsX) [Campylobacter coli strain IDH-11847]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=94683 R8567_RS01690 WP_002779313.1 331599..332195(+) (ctsX) [Campylobacter coli strain IDH-11847]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAGATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434

Multiple sequence alignment