Detailed information NTG0946776

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: ACG4IP_RS02710
• Genome accession: NZ_CP171656
• Coordinates: 577810..579186 (+)
• Length: 458 a.a.
• NCBI ID: WP_032074635.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain M820
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 572810..584186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG4IP_RS02695	-	573429..574052 (-)	624	WP_000349089.1	YtjB family periplasmic protein	-
ACG4IP_RS02700	serB	574155..575135 (+)	981	WP_000339682.1	phosphoserine phosphatase	-
ACG4IP_RS02705	-	575340..577679 (-)	2340	WP_001187860.1	PilZ domain-containing protein	-
ACG4IP_RS02710	radA/sms	577810..579186 (+)	1377	WP_032074635.1	DNA repair protein RadA	Machinery gene
ACG4IP_RS02715	fusA	579457..581544 (+)	2088	WP_000774532.1	elongation factor G	-
ACG4IP_RS02720	-	581658..583343 (-)	1686	WP_000615853.1	AMP-binding protein	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 49297.90 Da
• Isoelectric Point: 7.6828

>NTDB_id=946776 ACG4IP_RS02710 WP_032074635.1 577810..579186(+) (radA/sms) [Vibrio cholerae strain M820]
MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLAASPQVARNERLVGYAGALEAKVQTLADIDLQEVPRFTSGFK
ELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQTMCLLSGQMPTLYVTGEESLQQVAMRASRLGLPKQHLKMLSETNVDRI
CQIAEQEKPRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSIL
LDGDTDSRFRTLRSHKNRFGAVNELGVFAMTGQGMREVSNPSAIFLSRGEEATSGSSVMVVWEGTRPLLVEIQALVDYSQ
LANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALLMALLSSFRDRPLPKDVVVFGEVGL
AGEIRPVPSGQERLNEAFKHGFKKAIVPIANMPKGGIEGMQIHGVKKLSDAIAAFDEL

Nucleotide

• Length: 1377 bp

>NTDB_id=946776 ACG4IP_RS02710 WP_032074635.1 577810..579186(+) (radA/sms) [Vibrio cholerae strain M820]
ATTGTGAAAGCTAAGCGCGCCTATGTATGTAATGAATGTGGAGCGGATTTTCCGCGTTGGCAAGGACAGTGTAATGCCTG
TGGTTCGTGGAATTCGATTTCAGAAGTTCGTTTAGCGGCTTCACCGCAAGTGGCGCGCAATGAAAGGTTGGTCGGTTATG
CGGGAGCCCTTGAAGCGAAAGTACAAACTTTGGCTGATATTGATTTACAAGAAGTGCCTCGATTCACCAGTGGCTTTAAA
GAACTAGATCGCGTACTCGGCGGCGGAATTGTGCCGGGTGCGGCGATTTTGATTGGTGGTAATCCGGGCGCGGGTAAATC
GACCTTACTACTGCAAACCATGTGTTTACTTTCCGGACAAATGCCGACGTTGTACGTGACGGGCGAAGAATCGTTGCAGC
AGGTCGCGATGCGTGCTTCACGGCTTGGTTTGCCGAAACAGCATCTAAAAATGCTCTCAGAAACCAATGTGGATCGGATT
TGCCAGATTGCTGAGCAAGAAAAGCCGCGCATTATGGTCATCGATTCGATCCAAGTGATGCATGTGGCGGATGTGCAATC
GTCGCCGGGGAGTGTCGCGCAAGTGCGTGAATCGGCCACGGCGCTTACGCGTTATGCCAAACAAAATAATGTGGCGGTAT
TTATTGTGGGCCACGTAACCAAAGATGGTACGTTGGCGGGACCTAAAGTTCTTGAACACATCATCGATTGCTCGATTCTG
CTTGATGGTGATACAGACAGTCGTTTTCGTACACTTCGTAGTCATAAAAACCGTTTTGGTGCGGTCAATGAACTCGGTGT
GTTTGCGATGACTGGACAAGGGATGCGTGAGGTGAGTAATCCATCGGCGATTTTCCTTTCTCGTGGAGAAGAAGCCACAT
CTGGTAGCTCAGTGATGGTGGTGTGGGAAGGAACTCGCCCACTCTTAGTCGAGATTCAAGCTTTGGTCGATTACTCACAA
CTCGCTAACCCAAGACGCGTTGCGGTTGGCTTAGAACAAAACCGTCTCTCTTTATTACTGGCCGTGCTGCATAAACACGG
TGGTTTGCAAATGGCTGATCAGGATGTGTTTGTGAACGTAGTCGGTGGTGTGAAAGTGACGGAGACCAGTGCAGATTTAG
CGCTACTCATGGCGTTATTGTCGAGTTTTCGTGATCGTCCGCTGCCAAAAGATGTCGTGGTTTTTGGTGAAGTCGGATTG
GCTGGAGAAATTCGTCCCGTACCGAGTGGTCAAGAGCGCCTTAACGAAGCCTTCAAACATGGTTTTAAGAAAGCGATTGT
GCCGATTGCCAATATGCCGAAAGGTGGTATTGAAGGTATGCAGATCCACGGTGTGAAAAAGCTTTCTGATGCGATCGCGG
CTTTTGATGAGCTGTAA

Domains

Predicted by InterProScan.

• Subunit ChlI of Mg-chelatase (ChlI) (346-431)

• AAA domain (AAA_25) (81-223)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	43.818	100	0.441
radA	Streptococcus mitis NCTC 12261	45.093	93.45	0.421
radA	Streptococcus pneumoniae Rx1	45.093	93.45	0.421
radA	Streptococcus pneumoniae D39	45.093	93.45	0.421
radA	Streptococcus pneumoniae R6	45.093	93.45	0.421
radA	Streptococcus pneumoniae TIGR4	45.093	93.45	0.421
radA	Streptococcus mitis SK321	45.093	93.45	0.421