Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACG4PL_RS20515 Genome accession   NZ_CP171637
Coordinates   4210082..4211464 (-) Length   460 a.a.
NCBI ID   WP_001412353.1    Uniprot ID   -
Organism   Escherichia coli strain TC24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4205082..4216464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4PL_RS20500 (ACG4PL_20500) ettA 4206855..4208522 (+) 1668 WP_000046749.1 energy-dependent translational throttle protein EttA -
  ACG4PL_RS20505 (ACG4PL_20505) - 4208683..4208778 (-) 96 Protein_4016 hypothetical protein -
  ACG4PL_RS20510 (ACG4PL_20510) nadR 4208829..4210061 (-) 1233 WP_000093810.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ACG4PL_RS20515 (ACG4PL_20515) radA/sms 4210082..4211464 (-) 1383 WP_001412353.1 DNA repair protein RadA Machinery gene
  ACG4PL_RS20520 (ACG4PL_20520) serB 4211513..4212481 (-) 969 WP_001132955.1 phosphoserine phosphatase -
  ACG4PL_RS20525 (ACG4PL_20525) ytjB 4212587..4213231 (+) 645 WP_000124615.1 YtjB family periplasmic protein -
  ACG4PL_RS20530 (ACG4PL_20530) lplA 4213259..4214275 (+) 1017 WP_000105889.1 lipoate--protein ligase LplA -
  ACG4PL_RS20535 (ACG4PL_20535) - 4214307..4214570 (+) 264 Protein_4022 helix-turn-helix domain-containing protein -
  ACG4PL_RS20540 (ACG4PL_20540) deoD 4214731..4215450 (-) 720 WP_000224877.1 purine-nucleoside phosphorylase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49472.10 Da        Isoelectric Point: 7.1936

>NTDB_id=946732 ACG4PL_RS20515 WP_001412353.1 4210082..4211464(-) (radA/sms) [Escherichia coli strain TC24]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKMRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=946732 ACG4PL_RS20515 WP_001412353.1 4210082..4211464(-) (radA/sms) [Escherichia coli strain TC24]
GTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGC
CTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAACGGTGGCGCGTAACGAGCGTCTCAGCGGCT
ATGCCGGTAGCGCCGGGGTGGCAAAAGTCCAGAAACTCTCCGATATCAGCCTTGAAGAGCTGCCGCGTTTTTCCACCGGA
TTTAAAGAGTTCGACCGCGTACTAGGCGGCGGGGTGGTGCCGGGAAGCGCCATTCTGATTGGCGGTAACCCAGGTGCCGG
GAAATCCACATTGCTATTGCAAACGCTGTGCAAACTGGCGCAGCAGATGAAAACGCTGTATGTCACTGGCGAAGAGTCGC
TGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGACTCGATCCAGGTGATGCATATGGCGGATGT
ACAATCATCGCCAGGCAGCGTGGCGCAGGTGCGTGAAACAGCGGCTTATCTGACGCGCTTCGCCAAAATGCGCGGTGTGG
CGATTGTCATGGTTGGACACGTAACCAAAGATGGCTCGCTGGCGGGCCCTAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTTTTGGATGGCGATGCCGACTCCCGTTTTCGCACCTTACGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGCGTCTTCGCGATGACCGAACAGGGGCTGCGTGAAGTCAGCAACCCTTCGGCAATTTTCTTAAGTCGCGGCGATGAAG
TGACCTCCGGTAGCTCAGTGATGGTGGTATGGGAAGGAACGCGTCCACTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGCGAACCCACGCCGCGTGGCAGTGGGGCTGGAACAAAACCGTCTGGCAATCCTGCTGGCTGTGTTGCACCG
CCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCG
ACTTAGCGTTACTGCTGGCGATGGTTTCCAGCCTGCGTGACAGACCGCTGCCACAGGATCTGGTGGTGTTTGGTGAAGTC
GGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATTTCAGAAGCGGCGAAACACGGTTTTCGCCGGGC
GATTGTTCCGGCGGCTAACGTACCGAAAAAAGCGCCGGAAGGGATGCAGATTTTTGGCGTTAAAAAACTCTCCGACGCGC
TTAGCGTGTTCGACGACTTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.608

99.348

0.463
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus pneumoniae Rx1

43.202

99.13

0.428
  radA Streptococcus pneumoniae D39

43.202

99.13

0.428
  radA Streptococcus pneumoniae R6

43.202

99.13

0.428
  radA Streptococcus pneumoniae TIGR4

43.202

99.13

0.428
  radA Streptococcus mitis SK321

43.202

99.13

0.428