Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   R8920_RS05640 Genome accession   NZ_AP028404
Coordinates   1122215..1122595 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain BCH-11568     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117215..1127595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8920_RS05615 (B11568_10990) aspS 1117728..1119479 (+) 1752 WP_002822668.1 aspartate--tRNA ligase -
  R8920_RS05620 (B11568_11000) - 1119476..1120051 (+) 576 WP_002781658.1 adenylate kinase -
  R8920_RS05625 (B11568_11010) ppa 1120061..1120579 (+) 519 WP_317726995.1 inorganic diphosphatase -
  R8920_RS05630 (B11568_11020) msrA 1120627..1121127 (+) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8920_RS05635 (B11568_11030) - 1121350..1122204 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8920_RS05640 (B11568_11040) dprB 1122215..1122595 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  R8920_RS05645 (B11568_11050) dprA 1122592..1123362 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  R8920_RS05650 (B11568_11060) - 1123352..1124404 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  R8920_RS05655 (B11568_11070) ilvC 1124407..1125429 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  R8920_RS05660 (B11568_11080) - 1125552..1127486 (+) 1935 WP_002844636.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=94665 R8920_RS05640 WP_002776373.1 1122215..1122595(-) (dprB) [Campylobacter coli strain BCH-11568]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=94665 R8920_RS05640 WP_002776373.1 1122215..1122595(-) (dprB) [Campylobacter coli strain BCH-11568]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421

Multiple sequence alignment