Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACGS2V_RS24975 Genome accession   NZ_CP171472
Coordinates   5086440..5087432 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain 1070/13 pAA-     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5081440..5092432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGS2V_RS24950 (ACGS2V_24950) rbsD 5081564..5081983 (+) 420 WP_000715936.1 D-ribose pyranase -
  ACGS2V_RS24955 (ACGS2V_24955) rbsA 5081991..5083496 (+) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  ACGS2V_RS24960 (ACGS2V_24960) rbsC 5083501..5084466 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACGS2V_RS24965 (ACGS2V_24965) rbsB 5084491..5085381 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACGS2V_RS24970 (ACGS2V_24970) rbsK 5085507..5086436 (+) 930 WP_001300603.1 ribokinase -
  ACGS2V_RS24975 (ACGS2V_24975) cytR 5086440..5087432 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACGS2V_RS24980 (ACGS2V_24980) mdtD 5087398..5088825 (-) 1428 WP_001280833.1 multidrug transporter subunit MdtD -
  ACGS2V_RS24985 (ACGS2V_24985) yieP 5088848..5089540 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=946574 ACGS2V_RS24975 WP_000224470.1 5086440..5087432(+) (cytR) [Escherichia coli strain 1070/13 pAA-]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=946574 ACGS2V_RS24975 WP_000224470.1 5086440..5087432(+) (cytR) [Escherichia coli strain 1070/13 pAA-]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTACTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGTTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364