Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WDM69_RS08730 Genome accession   NZ_CP147511
Coordinates   1943644..1944282 (-) Length   212 a.a.
NCBI ID   WP_338755344.1    Uniprot ID   -
Organism   Moraxella lincolnii strain 302605.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1938644..1949282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM69_RS08705 (WDM69_08705) - 1939288..1940856 (-) 1569 WP_338755341.1 hypothetical protein -
  WDM69_RS08710 (WDM69_08710) - 1941206..1941610 (+) 405 WP_143823343.1 sulfurtransferase TusA family protein -
  WDM69_RS08715 (WDM69_08715) rpoH 1941792..1942769 (+) 978 WP_338755342.1 RNA polymerase sigma factor RpoH -
  WDM69_RS08720 (WDM69_08720) - 1942780..1943139 (+) 360 WP_338755343.1 DUF423 domain-containing protein -
  WDM69_RS08725 (WDM69_08725) smpB 1943146..1943616 (-) 471 WP_078308278.1 SsrA-binding protein SmpB -
  WDM69_RS08730 (WDM69_08730) ssb 1943644..1944282 (-) 639 WP_338755344.1 single-stranded DNA-binding protein Machinery gene
  WDM69_RS08735 (WDM69_08735) - 1944357..1944545 (-) 189 WP_338755345.1 hypothetical protein -
  WDM69_RS08740 (WDM69_08740) uvrA 1944926..1947814 (+) 2889 WP_338755346.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23499.18 Da        Isoelectric Point: 6.9895

>NTDB_id=946567 WDM69_RS08730 WP_338755344.1 1943644..1944282(-) (ssb) [Moraxella lincolnii strain 302605.3]
MRGVNKVIIVGNLGADPEVRQFNNGGNVTNISVATSEQWNDKQTGEPREATEWHRISLFNRLGEVAAQYLRKGSKVYIEG
SLRTRKYQDQNGQERYITEIRADNMQMLDSANSARGGVANQNHQGGYQSGYQGGHQGYGNFQNQNGNPNGNQSGFQNHQN
TANAYQNNFNNNNFNNTDNHSAQQAGQNNQNQPKPNNAVAMQPAPADEDIPF

Nucleotide


Download         Length: 639 bp        

>NTDB_id=946567 WDM69_RS08730 WP_338755344.1 1943644..1944282(-) (ssb) [Moraxella lincolnii strain 302605.3]
ATGCGAGGCGTTAATAAAGTCATCATCGTTGGCAACCTTGGGGCTGACCCAGAAGTGCGTCAGTTTAATAATGGAGGCAA
TGTTACCAACATATCCGTTGCCACCAGTGAGCAATGGAATGACAAACAAACAGGAGAGCCTCGTGAAGCCACCGAATGGC
ATCGCATCAGTCTGTTTAACCGTCTGGGTGAAGTCGCTGCTCAATATTTGCGTAAAGGCAGTAAAGTGTATATCGAAGGC
AGTCTGCGTACTCGTAAATACCAAGACCAAAATGGACAGGAGCGTTACATCACTGAAATCCGTGCTGACAACATGCAAAT
GCTTGACAGTGCCAACAGTGCCAGAGGAGGAGTCGCTAACCAAAATCATCAAGGCGGTTATCAAAGTGGTTATCAAGGCG
GCCATCAAGGCTATGGTAACTTCCAAAACCAAAATGGCAACCCAAATGGCAATCAAAGTGGATTTCAAAACCATCAAAAC
ACTGCCAATGCCTATCAAAATAACTTTAACAATAACAACTTTAACAACACCGACAATCACTCAGCCCAACAAGCAGGGCA
AAACAATCAAAATCAACCCAAACCCAATAACGCCGTTGCCATGCAGCCAGCACCTGCCGATGAAGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.074

100

0.5