Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACGS2V_RS00425 Genome accession   NZ_CP171472
Coordinates   86091..87116 (-) Length   341 a.a.
NCBI ID   WP_000644897.1    Uniprot ID   B7LA31
Organism   Escherichia coli strain 1070/13 pAA-     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 81091..92116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGS2V_RS00395 (ACGS2V_00395) zapB 81175..81420 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  ACGS2V_RS00400 (ACGS2V_00400) rraA 81505..81990 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ACGS2V_RS00405 (ACGS2V_00405) menA 82083..83009 (-) 927 WP_001307494.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACGS2V_RS00410 (ACGS2V_00410) hslU 83076..84407 (-) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  ACGS2V_RS00415 (ACGS2V_00415) hslV 84417..84947 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ACGS2V_RS00420 (ACGS2V_00420) ftsN 85040..85999 (-) 960 WP_000068834.1 cell division protein FtsN -
  ACGS2V_RS00425 (ACGS2V_00425) cytR 86091..87116 (-) 1026 WP_000644897.1 DNA-binding transcriptional regulator CytR Regulator
  ACGS2V_RS00430 (ACGS2V_00430) priA 87272..89470 (-) 2199 WP_001350069.1 primosomal protein N' Machinery gene
  ACGS2V_RS00435 (ACGS2V_00435) rpmE 89673..89885 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37800.74 Da        Isoelectric Point: 6.3001

>NTDB_id=946496 ACGS2V_RS00425 WP_000644897.1 86091..87116(-) (cytR) [Escherichia coli strain 1070/13 pAA-]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALHRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=946496 ACGS2V_RS00425 WP_000644897.1 86091..87116(-) (cytR) [Escherichia coli strain 1070/13 pAA-]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCATCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7LA31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.881

98.24

0.628
  cytR Vibrio cholerae C6706

65.138

95.894

0.625