Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACGTGP_RS13920 Genome accession   NZ_CP171398
Coordinates   2986666..2988114 (+) Length   482 a.a.
NCBI ID   WP_000778202.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T24     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2981666..2993114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS13895 (ACGTGP_13895) - 2981876..2982517 (+) 642 WP_024433203.1 putative metallopeptidase -
  ACGTGP_RS13900 (ACGTGP_13900) - 2982576..2983091 (+) 516 WP_000729387.1 DUF2280 domain-containing protein -
  ACGTGP_RS13905 (ACGTGP_13905) - 2983051..2984343 (+) 1293 WP_394556028.1 terminase large subunit domain-containing protein -
  ACGTGP_RS13910 (ACGTGP_13910) - 2984383..2985723 (+) 1341 WP_394556030.1 DUF4055 domain-containing protein -
  ACGTGP_RS13915 (ACGTGP_13915) - 2985733..2986488 (+) 756 Protein_2741 minor capsid protein -
  ACGTGP_RS13920 (ACGTGP_13920) rpoN/rpoN1 2986666..2988114 (+) 1449 WP_000778202.1 RNA polymerase factor sigma-54 Machinery gene
  ACGTGP_RS13925 (ACGTGP_13925) hpf 2988283..2988621 (+) 339 WP_001167461.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACGTGP_RS13930 (ACGTGP_13930) ibaG 2988760..2989011 (+) 252 WP_001083680.1 BolA family iron metabolism protein IbaG -
  ACGTGP_RS13935 (ACGTGP_13935) murA 2989018..2990274 (+) 1257 WP_000357156.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACGTGP_RS13940 (ACGTGP_13940) hisG 2990274..2990957 (+) 684 WP_001000724.1 ATP phosphoribosyltransferase -
  ACGTGP_RS13945 (ACGTGP_13945) hisD 2991063..2992352 (+) 1290 WP_001253725.1 histidinol dehydrogenase -

Sequence

Protein


Download         Length: 482 a.a.        Molecular weight: 55082.97 Da        Isoelectric Point: 4.6620

>NTDB_id=946480 ACGTGP_RS13920 WP_000778202.1 2986666..2988114(+) (rpoN/rpoN1) [Acinetobacter baumannii strain T24]
MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKVEDESLAESLSTLEHKETDDLTTELNADHLP
DDLPVDTEWDDIYTHQSTALGTPEFEEREDNRQVHLTLKEHILEQVNLLHFSKIDQLIAYCIVDALDDKGFLDAELEEII
LAVQHLLSEMDIDEEVEEDEVLVVLKHIQRLDPIGIGARNLAECLKVQLEFLPRETEYLKEARSLLQYYELLIANDLNKL
LKQTGLSKEQLKFAVDLLKTLKPYPGMDFEKQESEYQIPDVVVAKKDLHWQVQLNPDVMPKLRINSFYSSMIRRADQSDD
NLYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQKAFLEIGPEAMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRG
LFELKYFFSSHVGTTTGGEASSTAIRAMIKKLVSNENPRKPLSDNAIAALLKEEGIEVARRTVAKYRESLHIPSSSERKV
LI

Nucleotide


Download         Length: 1449 bp        

>NTDB_id=946480 ACGTGP_RS13920 WP_000778202.1 2986666..2988114(+) (rpoN/rpoN1) [Acinetobacter baumannii strain T24]
ATGAAATTATCTGTTGGATTGAAAGTTGCGAATTCATTGTCGTTAACGCCTCAATTGCAGCAGGCAATCCGTTTACTACA
ACTTTCTAGCCTAGAGTTAGAGCAAGAAATTCAAATTCAATTAGATAGTAATCCATTACTTGAAAAAGTAGAAGATGAAT
CACTAGCAGAAAGTTTATCTACTTTAGAACACAAAGAAACTGATGATCTTACAACAGAGTTGAATGCTGATCACTTACCT
GATGACTTGCCTGTTGATACTGAATGGGATGACATTTATACACATCAATCCACTGCTTTGGGTACTCCTGAGTTCGAAGA
GCGTGAAGATAATCGCCAAGTTCACCTGACGCTTAAAGAACATATTTTGGAGCAAGTGAACTTGCTGCATTTTTCAAAAA
TAGATCAGTTGATTGCTTATTGCATAGTTGATGCTTTAGATGATAAAGGTTTTCTGGATGCTGAATTAGAAGAGATTATT
TTGGCAGTACAGCATTTATTAAGTGAGATGGATATAGATGAGGAAGTGGAAGAGGATGAAGTTTTAGTAGTTTTAAAACA
TATTCAACGTCTTGATCCAATTGGTATTGGAGCTCGTAATTTAGCTGAATGTTTAAAAGTTCAGTTGGAGTTCTTGCCTC
GAGAAACTGAATATTTGAAAGAAGCCAGAAGTCTACTTCAATATTACGAATTACTGATTGCGAATGATCTTAATAAATTA
TTGAAACAAACAGGGCTTTCCAAGGAACAGTTAAAATTTGCAGTTGATTTATTAAAAACATTAAAGCCTTATCCAGGCAT
GGATTTTGAAAAGCAAGAATCAGAATATCAAATTCCTGACGTAGTCGTTGCCAAGAAGGACTTGCATTGGCAAGTTCAGT
TAAATCCTGATGTGATGCCAAAATTAAGAATCAATTCTTTTTATTCGAGTATGATTCGTAGGGCAGATCAAAGTGATGAT
AATTTATACCTACGTAATCAAATGCTTGAGGCTAAAAATTTTATAAAAAGTATTGATGAACGGCACAAAACATTATTAAA
AGTTGCGACTTGTATTGTTGAGCATCAAAAAGCATTTCTTGAAATAGGTCCCGAAGCAATGAAACCCTTAGTACTAAGGG
ATGTTGCAGAAGAAGTAGAATTACATGAGTCGACCGTTTCTCGCGTTACCACAAATAAGTATATGCTTACTCCACGTGGA
CTTTTTGAGTTGAAATACTTCTTTTCTAGTCATGTGGGGACAACCACAGGAGGTGAGGCTTCTTCTACCGCAATTCGGGC
GATGATTAAAAAGTTAGTTTCTAATGAAAATCCGCGTAAACCCTTGTCTGATAATGCAATTGCTGCTTTATTGAAAGAAG
AGGGAATAGAAGTAGCTAGAAGGACTGTAGCAAAATATAGAGAATCGTTACATATTCCATCGTCATCCGAGAGAAAAGTC
TTGATCTAA

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(111-308)

Sigma-54, DNA binding domain (Sigma54_DBD)

(323-479)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(7-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

43.333

100

0.459