Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   ACGTGP_RS10935 Genome accession   NZ_CP171398
Coordinates   2363373..2363888 (-) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain T24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2358373..2368888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS10910 (ACGTGP_10910) - 2358919..2360562 (+) 1644 WP_000281764.1 nitrite/sulfite reductase -
  ACGTGP_RS10915 (ACGTGP_10915) - 2360555..2361040 (+) 486 WP_000935246.1 DUF934 domain-containing protein -
  ACGTGP_RS10920 (ACGTGP_10920) - 2361123..2361476 (+) 354 WP_000457783.1 multidrug efflux SMR transporter -
  ACGTGP_RS10925 (ACGTGP_10925) - 2361519..2361962 (-) 444 WP_001176583.1 VOC family protein -
  ACGTGP_RS10930 (ACGTGP_10930) - 2362089..2363264 (-) 1176 WP_394555786.1 thiolase family protein -
  ACGTGP_RS10935 (ACGTGP_10935) fimT 2363373..2363888 (-) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  ACGTGP_RS10940 (ACGTGP_10940) omp38 2364270..2365340 (+) 1071 WP_002046685.1 outer membrane protein Omp38 -
  ACGTGP_RS10945 (ACGTGP_10945) - 2365465..2365623 (-) 159 WP_000692859.1 hypothetical protein -
  ACGTGP_RS10950 (ACGTGP_10950) - 2365627..2366832 (-) 1206 WP_269527554.1 RtcB family protein -
  ACGTGP_RS10955 (ACGTGP_10955) - 2367109..2368569 (-) 1461 WP_000004971.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=946467 ACGTGP_RS10935 WP_000477151.1 2363373..2363888(-) (fimT) [Acinetobacter baumannii strain T24]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=946467 ACGTGP_RS10935 WP_000477151.1 2363373..2363888(-) (fimT) [Acinetobacter baumannii strain T24]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGCTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427