Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   WBM82_RS20100 Genome accession   NZ_CP147494
Coordinates   3800060..3801205 (+) Length   381 a.a.
NCBI ID   WP_113712952.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3795060..3806205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS20075 (WBM82_20135) albF 3795076..3796356 (+) 1281 WP_003242974.1 pitrilysin family protein -
  WBM82_RS20080 (WBM82_20140) albG 3796353..3797054 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  WBM82_RS20085 (WBM82_20145) ywhL 3797060..3798436 (-) 1377 WP_110109508.1 YncE family protein -
  WBM82_RS20090 (WBM82_20150) ywhK 3798475..3799830 (-) 1356 WP_015250986.1 YncE family protein -
  WBM82_RS20095 (WBM82_20155) - 3799827..3800057 (-) 231 WP_024572000.1 hypothetical protein -
  WBM82_RS20100 (WBM82_20160) rapF 3800060..3801205 (+) 1146 WP_113712952.1 response regulator aspartate phosphatase RapF Regulator
  WBM82_RS20105 (WBM82_20165) phrF 3801189..3801308 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  WBM82_RS20110 (WBM82_20170) - 3801378..3801542 (-) 165 WP_248719425.1 hypothetical protein -
  WBM82_RS20115 (WBM82_20175) - 3801463..3801872 (+) 410 Protein_3807 YbaK/EbsC family protein -
  WBM82_RS20120 (WBM82_20180) speB 3801903..3802775 (-) 873 WP_003227545.1 agmatinase -
  WBM82_RS20125 (WBM82_20185) speE 3802836..3803666 (-) 831 WP_003227543.1 spermidine synthase -
  WBM82_RS20130 (WBM82_20190) pbpG 3803869..3805944 (+) 2076 WP_038427996.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45680.14 Da        Isoelectric Point: 4.9912

>NTDB_id=946457 WBM82_RS20100 WP_113712952.1 3800060..3801205(+) (rapF) [Bacillus subtilis strain YT1]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAEDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=946457 WBM82_RS20100 WP_113712952.1 3800060..3801205(+) (rapF) [Bacillus subtilis strain YT1]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGAAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-208)

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572