Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   WBM82_RS15080 Genome accession   NZ_CP147494
Coordinates   2807950..2808702 (-) Length   250 a.a.
NCBI ID   WP_080010571.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2802950..2813702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS15055 (WBM82_15105) mreC 2803363..2804235 (-) 873 WP_032677108.1 rod shape-determining protein MreC -
  WBM82_RS15060 (WBM82_15110) mreB 2804266..2805279 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WBM82_RS15065 (WBM82_15115) radC 2805371..2806066 (-) 696 WP_015251546.1 DNA repair protein RadC -
  WBM82_RS15070 (WBM82_15120) maf 2806103..2806672 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  WBM82_RS15075 (WBM82_15125) spoIIB 2806825..2807823 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  WBM82_RS15080 (WBM82_15130) comC 2807950..2808702 (-) 753 WP_080010571.1 A24 family peptidase Machinery gene
  WBM82_RS15085 (WBM82_15135) folC 2808842..2810134 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  WBM82_RS15090 (WBM82_15140) valS 2810194..2812836 (-) 2643 WP_003229639.1 valine--tRNA ligase -
  WBM82_RS15095 (WBM82_15145) - 2813284..2813475 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26673.27 Da        Isoelectric Point: 9.4398

>NTDB_id=946440 WBM82_RS15080 WP_080010571.1 2807950..2808702(-) (comC) [Bacillus subtilis strain YT1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAMAAGSILAYLYGDSIIS
FYIKMALADC

Nucleotide


Download         Length: 753 bp        

>NTDB_id=946440 WBM82_RS15080 WP_080010571.1 2807950..2808702(-) (comC) [Bacillus subtilis strain YT1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATGGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGCTGACTGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.19

98.8

0.98