Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WBM82_RS12980 Genome accession   NZ_CP147494
Coordinates   2456734..2457537 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2451734..2462537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS12955 (WBM82_13000) glpQ 2452881..2453612 (-) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -
  WBM82_RS12960 (WBM82_13005) yqiI 2453691..2454311 (-) 621 WP_080477816.1 N-acetylmuramoyl-L-alanine amidase -
  WBM82_RS12965 (WBM82_13010) yqiH 2454326..2454619 (-) 294 WP_003230284.1 lipoprotein -
  WBM82_RS12970 (WBM82_13015) - 2454927..2455079 (+) 153 WP_014480226.1 hypothetical protein -
  WBM82_RS12975 (WBM82_13020) yqiG 2455152..2456270 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  WBM82_RS12980 (WBM82_13025) spo0A 2456734..2457537 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WBM82_RS12985 (WBM82_13030) spoIVB 2457813..2459093 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  WBM82_RS12990 (WBM82_13035) recN 2459268..2460998 (-) 1731 WP_144500717.1 DNA repair protein RecN Machinery gene
  WBM82_RS12995 (WBM82_13040) argR 2461035..2461484 (-) 450 WP_015384067.1 arginine repressor ArgR -
  WBM82_RS13000 (WBM82_13045) yqxC 2461582..2462427 (-) 846 WP_160245701.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=946421 WBM82_RS12980 WP_003226427.1 2456734..2457537(-) (spo0A) [Bacillus subtilis strain YT1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=946421 WBM82_RS12980 WP_003226427.1 2456734..2457537(-) (spo0A) [Bacillus subtilis strain YT1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAAAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCACATATAAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTAGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGCTATACCGTC
AGCATGACAAAAGCTAAACCTACCAACAGCGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1