Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WBM82_RS10670 Genome accession   NZ_CP147494
Coordinates   2056117..2057247 (+) Length   376 a.a.
NCBI ID   WP_046663334.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2051117..2062247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS10640 (WBM82_10675) - 2051776..2052048 (-) 273 WP_046663912.1 hypothetical protein -
  WBM82_RS10645 (WBM82_10680) - 2052213..2052914 (-) 702 WP_046663327.1 hypothetical protein -
  WBM82_RS10650 (WBM82_10685) - 2053562..2053927 (+) 366 WP_029318057.1 hypothetical protein -
  WBM82_RS10655 (WBM82_10690) - 2054108..2054404 (+) 297 Protein_1947 SOS response-associated peptidase family protein -
  WBM82_RS10660 (WBM82_10695) - 2054668..2055042 (+) 375 WP_046663332.1 YoqO family protein -
  WBM82_RS10665 (WBM82_10700) - 2055838..2055984 (+) 147 Protein_1949 phage holin -
  WBM82_RS10670 (WBM82_10705) rapC 2056117..2057247 (+) 1131 WP_046663334.1 tetratricopeptide repeat protein Regulator
  WBM82_RS10675 (WBM82_10710) - 2057237..2057380 (+) 144 WP_153801665.1 hypothetical protein -
  WBM82_RS10680 (WBM82_10715) - 2057534..2057734 (-) 201 WP_021481449.1 hypothetical protein -
  WBM82_RS10685 (WBM82_10720) - 2057956..2058310 (-) 355 Protein_1953 UV damage repair protein UvrX -
  WBM82_RS10690 (WBM82_10725) - 2058308..2058462 (-) 155 Protein_1954 T7SS effector LXG polymorphic toxin -
  WBM82_RS10695 (WBM82_10730) - 2058550..2059116 (-) 567 WP_046663338.1 SMI1/KNR4 family protein -
  WBM82_RS10700 (WBM82_10735) yobN 2059245..2060681 (+) 1437 WP_160221640.1 flavin monoamine oxidase family protein -
  WBM82_RS10705 (WBM82_10740) csaA 2060929..2061261 (-) 333 WP_017697558.1 chaperone CsaA -
  WBM82_RS10710 (WBM82_10745) yobQ 2061326..2062051 (-) 726 WP_080477820.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44392.26 Da        Isoelectric Point: 6.4230

>NTDB_id=946419 WBM82_RS10670 WP_046663334.1 2056117..2057247(+) (rapC) [Bacillus subtilis strain YT1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKKYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIKKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=946419 WBM82_RS10670 WP_046663334.1 2056117..2057247(+) (rapC) [Bacillus subtilis strain YT1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAAGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAAAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCAAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455