Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WBM82_RS08290 Genome accession   NZ_CP147494
Coordinates   1498448..1498726 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain YT1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1493448..1503726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS08270 (WBM82_08300) - 1494636..1495547 (+) 912 WP_248719433.1 ketopantoate reductase family protein -
  WBM82_RS08275 (WBM82_08305) ampS 1495581..1496813 (-) 1233 WP_003232341.1 aminopeptidase -
  WBM82_RS08280 (WBM82_08310) ykpC 1496922..1497056 (-) 135 WP_003238865.1 protein YkpC -
  WBM82_RS08285 (WBM82_08315) mreBH 1497157..1498164 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WBM82_RS08290 (WBM82_08320) abrB 1498448..1498726 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WBM82_RS08295 (WBM82_08325) kinC 1498916..1500202 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WBM82_RS08300 (WBM82_08330) ykqA 1500218..1501045 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  WBM82_RS08305 (WBM82_08335) ktrC 1501108..1501773 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WBM82_RS08310 (WBM82_08340) ade 1501929..1503662 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=946414 WBM82_RS08290 WP_003244728.1 1498448..1498726(+) (abrB) [Bacillus subtilis strain YT1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=946414 WBM82_RS08290 WP_003244728.1 1498448..1498726(+) (abrB) [Bacillus subtilis strain YT1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576