Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   WBM82_RS08070 Genome accession   NZ_CP147494
Coordinates   1458497..1458961 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain YT1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453497..1463961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS08050 (WBM82_08080) kinA 1453964..1455784 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  WBM82_RS08055 (WBM82_08085) dapX 1455794..1456975 (-) 1182 WP_014476653.1 aminotransferase A -
  WBM82_RS08060 (WBM82_08090) - 1457177..1457338 (-) 162 WP_003245246.1 hypothetical protein -
  WBM82_RS08065 (WBM82_08095) cheV 1457542..1458453 (+) 912 WP_029727006.1 chemotaxis protein CheV -
  WBM82_RS08070 (WBM82_08100) kre 1458497..1458961 (-) 465 WP_003232406.1 YkyB family protein Regulator
  WBM82_RS08075 (WBM82_08105) ykuC 1459087..1460379 (-) 1293 WP_029727007.1 MFS transporter -
  WBM82_RS08080 (WBM82_08110) ltdD 1460455..1460949 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  WBM82_RS08085 (WBM82_08115) ppeE 1461001..1461864 (-) 864 WP_029727008.1 metallophosphoesterase -
  WBM82_RS08090 (WBM82_08120) fadH 1462007..1462771 (+) 765 WP_029727009.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=946412 WBM82_RS08070 WP_003232406.1 1458497..1458961(-) (kre) [Bacillus subtilis strain YT1]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=946412 WBM82_RS08070 WP_003232406.1 1458497..1458961(-) (kre) [Bacillus subtilis strain YT1]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1