Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WBM82_RS06135 Genome accession   NZ_CP147494
Coordinates   1099776..1100354 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain YT1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094776..1105354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS06115 (WBM82_06140) hemAT 1095287..1096585 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  WBM82_RS06120 (WBM82_06145) yhfW 1096724..1098253 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  WBM82_RS06125 (WBM82_06150) yhxC 1098365..1099222 (+) 858 WP_160221474.1 SDR family oxidoreductase -
  WBM82_RS06130 (WBM82_06155) yhzC 1099250..1099483 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WBM82_RS06135 (WBM82_06160) comK 1099776..1100354 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WBM82_RS06140 (WBM82_06165) yhxD 1100401..1101300 (-) 900 WP_076457899.1 SDR family oxidoreductase -
  WBM82_RS06145 (WBM82_06170) yhjA 1101517..1101786 (+) 270 WP_160221475.1 excalibur calcium-binding domain-containing protein -
  WBM82_RS06150 (WBM82_06175) yhjB 1101829..1103298 (-) 1470 WP_122895185.1 sodium:solute symporter -
  WBM82_RS06155 (WBM82_06180) yhjC 1103295..1103495 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WBM82_RS06160 (WBM82_06185) - 1103694..1104065 (-) 372 WP_160221476.1 hypothetical protein -
  WBM82_RS06165 (WBM82_06190) yhjE 1104217..1104840 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WBM82_RS06170 (WBM82_06195) lepB 1104842..1105348 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=946400 WBM82_RS06135 WP_003245329.1 1099776..1100354(+) (comK) [Bacillus subtilis strain YT1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=946400 WBM82_RS06135 WP_003245329.1 1099776..1100354(+) (comK) [Bacillus subtilis strain YT1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1