Detailed information NTG0946378

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: WBI56_RS19115
• Genome accession: NZ_CP147492
• Coordinates: 3696486..3697631 (+)
• Length: 381 a.a.
• NCBI ID: WP_017696253.1
• Uniprot ID: A0A0C3JF17
• Organism: Bacillus subtilis strain MC4-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3691486..3702631

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WBI56_RS19090 (WBI56_19090)	albF	3691501..3692781 (+)	1281	WP_029318696.1	pitrilysin family protein	-
WBI56_RS19095 (WBI56_19095)	albG	3692778..3693479 (+)	702	WP_029318695.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
WBI56_RS19100 (WBI56_19100)	ywhL	3693485..3694861 (-)	1377	WP_338731382.1	YncE family protein	-
WBI56_RS19105 (WBI56_19105)	ywhK	3694901..3696256 (-)	1356	WP_163117070.1	YncE family protein	-
WBI56_RS19110 (WBI56_19110)	-	3696253..3696483 (-)	231	WP_041334639.1	hypothetical protein	-
WBI56_RS19115 (WBI56_19115)	rapF	3696486..3697631 (+)	1146	WP_017696253.1	tetratricopeptide repeat protein	Regulator
WBI56_RS19120 (WBI56_19120)	-	3697615..3697734 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
WBI56_RS19125 (WBI56_19125)	ywhH	3697833..3698291 (+)	459	Protein_3707	YbaK/EbsC family protein	-
WBI56_RS19130 (WBI56_19130)	speB	3698323..3699195 (-)	873	WP_003227545.1	agmatinase	-
WBI56_RS19135 (WBI56_19135)	speE	3699256..3700086 (-)	831	WP_003227543.1	spermidine synthase	-
WBI56_RS19140 (WBI56_19140)	pbpG	3700288..3702363 (+)	2076	WP_144500474.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45593.24 Da
• Isoelectric Point: 5.0684

>NTDB_id=946378 WBI56_RS19115 WP_017696253.1 3696486..3697631(+) (rapF) [Bacillus subtilis strain MC4-2]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=946378 WBI56_RS19115 WP_017696253.1 3696486..3697631(+) (rapF) [Bacillus subtilis strain MC4-2]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAACTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TCAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTGACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_12) (189-253)

3D structure

• AlphaFold DB: A0A0C3JF17

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	80.052	100	0.801
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57