Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WBI56_RS16050 Genome accession   NZ_CP147492
Coordinates   3087473..3088117 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3082473..3093117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS16015 (WBI56_16015) mrpB 3083665..3084096 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  WBI56_RS16020 (WBI56_16020) mrpC 3084096..3084437 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WBI56_RS16025 (WBI56_16025) mrpD 3084430..3085911 (+) 1482 WP_338730754.1 Na+/H+ antiporter subunit D -
  WBI56_RS16030 (WBI56_16030) mrpE 3085917..3086393 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  WBI56_RS16035 (WBI56_16035) mrpF 3086393..3086677 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  WBI56_RS16040 (WBI56_16040) mnhG 3086661..3087035 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  WBI56_RS16045 (WBI56_16045) yuxO 3087074..3087454 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  WBI56_RS16050 (WBI56_16050) comA 3087473..3088117 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WBI56_RS16055 (WBI56_16055) comP 3088198..3090510 (-) 2313 WP_047183111.1 histidine kinase Regulator
  WBI56_RS16060 (WBI56_16060) comX 3090526..3090747 (-) 222 WP_014114983.1 competence pheromone ComX -
  WBI56_RS16065 (WBI56_16065) - 3090744..3091613 (-) 870 WP_169037713.1 polyprenyl synthetase family protein -
  WBI56_RS16070 (WBI56_16070) degQ 3091798..3091938 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WBI56_RS16075 (WBI56_16075) - 3092160..3092285 (+) 126 WP_338730755.1 hypothetical protein -
  WBI56_RS16080 (WBI56_16080) - 3092400..3092768 (+) 369 WP_017695529.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=946366 WBI56_RS16050 WP_003220716.1 3087473..3088117(-) (comA) [Bacillus subtilis strain MC4-2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=946366 WBI56_RS16050 WP_003220716.1 3087473..3088117(-) (comA) [Bacillus subtilis strain MC4-2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1