Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   WBI56_RS14095 Genome accession   NZ_CP147492
Coordinates   2704817..2705563 (-) Length   248 a.a.
NCBI ID   WP_101172351.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2699817..2710563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS14070 (WBI56_14070) mreC 2700223..2701095 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  WBI56_RS14075 (WBI56_14075) mreB 2701126..2702139 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  WBI56_RS14080 (WBI56_14080) radC 2702231..2702926 (-) 696 WP_014480455.1 DNA repair protein RadC -
  WBI56_RS14085 (WBI56_14085) maf 2702963..2703532 (-) 570 WP_338730647.1 Maf family nucleotide pyrophosphatase -
  WBI56_RS14090 (WBI56_14090) spoIIB 2703685..2704683 (-) 999 WP_213385725.1 SPOR domain-containing protein -
  WBI56_RS14095 (WBI56_14095) comC 2704817..2705563 (-) 747 WP_101172351.1 A24 family peptidase Machinery gene
  WBI56_RS14100 (WBI56_14100) folC 2705703..2706995 (-) 1293 WP_338730649.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  WBI56_RS14105 (WBI56_14105) valS 2707055..2709697 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  WBI56_RS14110 (WBI56_14110) - 2710145..2710336 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=946361 WBI56_RS14095 WP_101172351.1 2704817..2705563(-) (comC) [Bacillus subtilis strain MC4-2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=946361 WBI56_RS14095 WP_101172351.1 2704817..2705563(-) (comC) [Bacillus subtilis strain MC4-2]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTAACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992