Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WBI56_RS12735 Genome accession   NZ_CP147492
Coordinates   2473302..2474069 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain MC4-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2468302..2479069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS12715 (WBI56_12715) ppsR 2468476..2469288 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WBI56_RS12720 (WBI56_12720) ccpN 2469314..2469952 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WBI56_RS12725 (WBI56_12725) glyS 2470085..2472124 (-) 2040 WP_338730589.1 glycine--tRNA ligase subunit beta -
  WBI56_RS12730 (WBI56_12730) glyQ 2472117..2473004 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WBI56_RS12735 (WBI56_12735) recO 2473302..2474069 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  WBI56_RS12740 (WBI56_12740) yqzL 2474106..2474249 (-) 144 WP_003230053.1 YqzL family protein -
  WBI56_RS12745 (WBI56_12745) era 2474397..2475302 (-) 906 WP_003230051.1 GTPase Era -
  WBI56_RS12750 (WBI56_12750) cdd 2475283..2475693 (-) 411 WP_003230049.1 cytidine deaminase -
  WBI56_RS12755 (WBI56_12755) unpK 2475812..2476183 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  WBI56_RS12760 (WBI56_12760) ybeY 2476164..2476637 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WBI56_RS12765 (WBI56_12765) pgpH 2476638..2478773 (-) 2136 WP_116316530.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=946353 WBI56_RS12735 WP_014477369.1 2473302..2474069(-) (recO) [Bacillus subtilis strain MC4-2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=946353 WBI56_RS12735 WP_014477369.1 2473302..2474069(-) (recO) [Bacillus subtilis strain MC4-2]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996