Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WBI56_RS12210 Genome accession   NZ_CP147492
Coordinates   2383293..2384096 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378293..2389096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS12185 (WBI56_12185) glpQ 2379430..2380161 (-) 732 WP_032726116.1 glycerophosphodiester phosphodiesterase -
  WBI56_RS12190 (WBI56_12190) yqiI 2380240..2380860 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  WBI56_RS12195 (WBI56_12195) - 2380880..2381176 (-) 297 WP_014480225.1 hypothetical protein -
  WBI56_RS12200 (WBI56_12200) - 2381484..2381636 (+) 153 WP_122060483.1 hypothetical protein -
  WBI56_RS12205 (WBI56_12205) yqiG 2381709..2382827 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  WBI56_RS12210 (WBI56_12210) spo0A 2383293..2384096 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WBI56_RS12215 (WBI56_12215) spoIVB 2384372..2385652 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WBI56_RS12220 (WBI56_12220) recN 2385827..2387557 (-) 1731 WP_167559478.1 DNA repair protein RecN Machinery gene
  WBI56_RS12225 (WBI56_12225) argR 2387594..2388043 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WBI56_RS12230 (WBI56_12230) yqxC 2388141..2388986 (-) 846 WP_128474051.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=946342 WBI56_RS12210 WP_003226427.1 2383293..2384096(-) (spo0A) [Bacillus subtilis strain MC4-2]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=946342 WBI56_RS12210 WP_003226427.1 2383293..2384096(-) (spo0A) [Bacillus subtilis strain MC4-2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATTTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1