Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WBI56_RS11220 Genome accession   NZ_CP147492
Coordinates   2205860..2206480 (+) Length   206 a.a.
NCBI ID   WP_024571847.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2200860..2211480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS11180 (WBI56_11180) ypqE 2201991..2202497 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  WBI56_RS11185 (WBI56_11185) ypqA 2202635..2203054 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  WBI56_RS11190 (WBI56_11190) yppG 2203075..2203452 (-) 378 WP_014477159.1 YppG family protein -
  WBI56_RS11195 (WBI56_11195) yppF 2203640..2203828 (+) 189 WP_003230690.1 YppF family protein -
  WBI56_RS11200 (WBI56_11200) yppE 2203867..2204238 (-) 372 WP_338730519.1 YppE family protein -
  WBI56_RS11205 (WBI56_11205) yppD 2204284..2204529 (-) 246 WP_338730520.1 YppD family protein -
  WBI56_RS11210 (WBI56_11210) sspM 2204728..2204832 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WBI56_RS11215 (WBI56_11215) yppC 2204857..2205819 (-) 963 WP_029878384.1 DUF2515 domain-containing protein -
  WBI56_RS11220 (WBI56_11220) recU 2205860..2206480 (+) 621 WP_024571847.1 Holliday junction resolvase RecU Machinery gene
  WBI56_RS11225 (WBI56_11225) ponA 2206502..2209255 (+) 2754 WP_338730522.1 PBP1A family penicillin-binding protein -
  WBI56_RS11230 (WBI56_11230) ypoC 2209331..2209825 (-) 495 WP_009967579.1 YpoC family protein -
  WBI56_RS11235 (WBI56_11235) nth 2209822..2210481 (-) 660 WP_009967580.1 endonuclease III -
  WBI56_RS11240 (WBI56_11240) dnaD 2210500..2211198 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23975.09 Da        Isoelectric Point: 9.6240

>NTDB_id=946341 WBI56_RS11220 WP_024571847.1 2205860..2206480(+) (recU) [Bacillus subtilis strain MC4-2]
MIRYPNGKTFQPKHSVSSQNSQKRSPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=946341 WBI56_RS11220 WP_024571847.1 2205860..2206480(+) (recU) [Bacillus subtilis strain MC4-2]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGTCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995