Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WBI56_RS10370 Genome accession   NZ_CP147492
Coordinates   2067982..2069112 (+) Length   376 a.a.
NCBI ID   WP_338730481.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2054546..2080602 2067982..2069112 within 0


Gene organization within MGE regions


Location: 2054546..2080602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS10255 (WBI56_10255) - 2054681..2054943 (-) 263 Protein_1965 DNA-binding protein -
  WBI56_RS10260 (WBI56_10260) - 2055012..2056118 (-) 1107 WP_338730475.1 DUF5677 domain-containing protein -
  WBI56_RS10265 (WBI56_10265) - 2056200..2056532 (-) 333 WP_080375754.1 HIT domain-containing protein -
  WBI56_RS10270 (WBI56_10270) - 2057136..2057267 (-) 132 WP_043857647.1 hypothetical protein -
  WBI56_RS10275 (WBI56_10275) - 2057278..2057507 (-) 230 Protein_1969 hypothetical protein -
  WBI56_RS10280 (WBI56_10280) - 2057511..2057762 (-) 252 WP_072176392.1 hypothetical protein -
  WBI56_RS10285 (WBI56_10285) - 2057827..2058006 (+) 180 WP_151262527.1 hypothetical protein -
  WBI56_RS10290 (WBI56_10290) - 2058118..2058348 (+) 231 WP_043857649.1 membrane protein -
  WBI56_RS10295 (WBI56_10295) - 2058358..2058750 (-) 393 WP_072176394.1 UPF0715 family protein -
  WBI56_RS10300 (WBI56_10300) - 2058795..2059016 (-) 222 WP_116315615.1 hypothetical protein -
  WBI56_RS10305 (WBI56_10305) - 2059054..2059407 (-) 354 WP_338734158.1 hypothetical protein -
  WBI56_RS10310 (WBI56_10310) - 2059516..2060157 (-) 642 WP_338730477.1 DUF3885 domain-containing protein -
  WBI56_RS10315 (WBI56_10315) - 2060331..2060557 (-) 227 Protein_1977 helix-turn-helix transcriptional regulator -
  WBI56_RS10320 (WBI56_10320) - 2060649..2061086 (-) 438 WP_046160477.1 hypothetical protein -
  WBI56_RS10325 (WBI56_10325) - 2061177..2061560 (-) 384 WP_046160541.1 UPF0715 family protein -
  WBI56_RS10330 (WBI56_10330) - 2061887..2062441 (-) 555 WP_338730479.1 hypothetical protein -
  WBI56_RS10335 (WBI56_10335) - 2062959..2063324 (+) 366 WP_071577897.1 hypothetical protein -
  WBI56_RS10340 (WBI56_10340) - 2063546..2064220 (+) 675 WP_338734159.1 SOS response-associated peptidase -
  WBI56_RS10345 (WBI56_10345) - 2064482..2065399 (-) 918 WP_230488201.1 hypothetical protein -
  WBI56_RS10350 (WBI56_10350) - 2065470..2065631 (-) 162 Protein_1984 hypothetical protein -
  WBI56_RS10355 (WBI56_10355) - 2065775..2065999 (+) 225 Protein_1985 hypothetical protein -
  WBI56_RS10360 (WBI56_10360) - 2066531..2066905 (+) 375 WP_338730480.1 YoqO family protein -
  WBI56_RS10365 (WBI56_10365) - 2067702..2067848 (+) 147 Protein_1987 phage holin -
  WBI56_RS10370 (WBI56_10370) rapC 2067982..2069112 (+) 1131 WP_338730481.1 Rap family tetratricopeptide repeat protein Regulator
  WBI56_RS10375 (WBI56_10375) - 2069102..2069245 (+) 144 WP_153801665.1 hypothetical protein -
  WBI56_RS10380 (WBI56_10380) - 2069352..2069594 (-) 243 WP_338730482.1 hypothetical protein -
  WBI56_RS10385 (WBI56_10385) - 2069817..2070482 (-) 666 WP_338730483.1 DNA polymerase -
  WBI56_RS10390 (WBI56_10390) - 2070461..2071045 (-) 585 WP_338730484.1 type VI secretion protein ImpB -
  WBI56_RS10395 (WBI56_10395) - 2071038..2071333 (-) 296 Protein_1993 YolD-like family protein -
  WBI56_RS10400 (WBI56_10400) - 2071494..2071786 (+) 293 Protein_1994 hypothetical protein -
  WBI56_RS10405 (WBI56_10405) - 2071826..2072185 (-) 360 WP_043857661.1 hypothetical protein -
  WBI56_RS10410 (WBI56_10410) - 2072445..2072528 (+) 84 WP_072592542.1 putative holin-like toxin -
  WBI56_RS10415 (WBI56_10415) yokL 2072817..2073350 (-) 534 WP_085187541.1 GNAT family protein -
  WBI56_RS10420 (WBI56_10420) yokK 2073386..2073964 (-) 579 WP_257432906.1 SMI1/KNR4 family protein -
  WBI56_RS10425 (WBI56_10425) yokJ 2074027..2074524 (-) 498 WP_144530259.1 SMI1/KNR4 family protein -
  WBI56_RS10430 (WBI56_10430) - 2074535..2076250 (-) 1716 WP_338730485.1 ribonuclease YeeF family protein -
  WBI56_RS10435 (WBI56_10435) yobM 2076390..2076908 (-) 519 WP_338730486.1 SMI1/KNR4 family protein -
  WBI56_RS10440 (WBI56_10440) yobN 2077036..2078472 (+) 1437 WP_124073037.1 flavin monoamine oxidase family protein -
  WBI56_RS10445 (WBI56_10445) csaA 2078722..2079054 (-) 333 WP_338730487.1 chaperone CsaA -
  WBI56_RS10450 (WBI56_10450) yobQ 2079119..2079844 (-) 726 WP_072592544.1 helix-turn-helix domain-containing protein -
  WBI56_RS10455 (WBI56_10455) yobR 2079859..2080602 (-) 744 WP_041351142.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.20 Da        Isoelectric Point: 6.0777

>NTDB_id=946340 WBI56_RS10370 WP_338730481.1 2067982..2069112(+) (rapC) [Bacillus subtilis strain MC4-2]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIKKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=946340 WBI56_RS10370 WP_338730481.1 2067982..2069112(+) (rapC) [Bacillus subtilis strain MC4-2]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTTTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCAAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455