Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WBI56_RS07900 Genome accession   NZ_CP147492
Coordinates   1502919..1503197 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain MC4-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1497919..1508197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS07880 (WBI56_07880) - 1499109..1500018 (+) 910 Protein_1491 ketopantoate reductase family protein -
  WBI56_RS07885 (WBI56_07885) ampS 1500052..1501284 (-) 1233 WP_003232341.1 aminopeptidase -
  WBI56_RS07890 (WBI56_07890) ykpC 1501393..1501527 (-) 135 WP_003238865.1 protein YkpC -
  WBI56_RS07895 (WBI56_07895) mreBH 1501628..1502635 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WBI56_RS07900 (WBI56_07900) abrB 1502919..1503197 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WBI56_RS07905 (WBI56_07905) kinC 1503387..1504673 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WBI56_RS07910 (WBI56_07910) ykqA 1504689..1505516 (+) 828 WP_338733597.1 gamma-glutamylcyclotransferase -
  WBI56_RS07915 (WBI56_07915) ktrC 1505579..1506244 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WBI56_RS07920 (WBI56_07920) ade 1506400..1508136 (+) 1737 WP_338733599.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=946335 WBI56_RS07900 WP_003244728.1 1502919..1503197(+) (abrB) [Bacillus subtilis strain MC4-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=946335 WBI56_RS07900 WP_003244728.1 1502919..1503197(+) (abrB) [Bacillus subtilis strain MC4-2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576