Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   WBI56_RS07780 Genome accession   NZ_CP147492
Coordinates   1478847..1479422 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473847..1484422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS07750 (WBI56_07750) dapD 1474034..1474744 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  WBI56_RS07755 (WBI56_07755) dapI 1474814..1475938 (+) 1125 WP_106073886.1 N-acetyldiaminopimelate deacetylase -
  WBI56_RS07760 (WBI56_07760) ykuS 1476000..1476245 (+) 246 WP_003232382.1 YkuS family protein -
  WBI56_RS07765 (WBI56_07765) mscT 1476282..1477085 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  WBI56_RS07770 (WBI56_07770) ahpA 1477322..1477864 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  WBI56_RS07775 (WBI56_07775) ykuV 1477935..1478381 (+) 447 WP_024571971.1 thiol-disulfide oxidoreductase YkuV -
  WBI56_RS07780 (WBI56_07780) rok 1478847..1479422 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  WBI56_RS07785 (WBI56_07785) cse15 1479463..1480428 (-) 966 WP_024571970.1 spore protein Cse15 -
  WBI56_RS07790 (WBI56_07790) mobA 1480565..1481164 (+) 600 WP_338733571.1 molybdenum cofactor guanylyltransferase -
  WBI56_RS07795 (WBI56_07795) moeB 1481215..1482234 (+) 1020 WP_017696813.1 molybdopterin-synthase adenylyltransferase MoeB -
  WBI56_RS07800 (WBI56_07800) glp 1482252..1483544 (+) 1293 WP_124059810.1 gephyrin-like molybdotransferase Glp -
  WBI56_RS07805 (WBI56_07805) mobB 1483505..1484026 (+) 522 WP_338733576.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=946334 WBI56_RS07780 WP_003232378.1 1478847..1479422(+) (rok) [Bacillus subtilis strain MC4-2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=946334 WBI56_RS07780 WP_003232378.1 1478847..1479422(+) (rok) [Bacillus subtilis strain MC4-2]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1