Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   WBI56_RS07680 Genome accession   NZ_CP147492
Coordinates   1463000..1463464 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain MC4-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458000..1468464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS07660 (WBI56_07660) kinA 1458467..1460287 (+) 1821 WP_338733554.1 sporulation histidine kinase KinA -
  WBI56_RS07665 (WBI56_07665) dapX 1460298..1461479 (-) 1182 WP_338733556.1 aminotransferase A -
  WBI56_RS07670 (WBI56_07670) - 1461681..1461842 (-) 162 WP_014476654.1 hypothetical protein -
  WBI56_RS07675 (WBI56_07675) cheV 1462045..1462956 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  WBI56_RS07680 (WBI56_07680) kre 1463000..1463464 (-) 465 WP_003232406.1 YkyB family protein Regulator
  WBI56_RS07685 (WBI56_07685) ykuC 1463590..1464882 (-) 1293 WP_003245267.1 MFS transporter -
  WBI56_RS07690 (WBI56_07690) ltdD 1464958..1465452 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  WBI56_RS07695 (WBI56_07695) ppeE 1465509..1466369 (-) 861 WP_338733560.1 metallophosphoesterase -
  WBI56_RS07700 (WBI56_07700) fadH 1466512..1467276 (+) 765 WP_338733561.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=946333 WBI56_RS07680 WP_003232406.1 1463000..1463464(-) (kre) [Bacillus subtilis strain MC4-2]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=946333 WBI56_RS07680 WP_003232406.1 1463000..1463464(-) (kre) [Bacillus subtilis strain MC4-2]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1