Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WBI56_RS05615 Genome accession   NZ_CP147492
Coordinates   1086993..1087571 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain MC4-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081993..1092571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS05595 (WBI56_05595) hemAT 1082504..1083802 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  WBI56_RS05600 (WBI56_05600) yhfW 1083941..1085470 (-) 1530 WP_338733071.1 FAD-dependent oxidoreductase -
  WBI56_RS05605 (WBI56_05605) yhxC 1085582..1086439 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WBI56_RS05610 (WBI56_05610) yhzC 1086467..1086700 (-) 234 WP_262119605.1 IDEAL domain-containing protein -
  WBI56_RS05615 (WBI56_05615) comK 1086993..1087571 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WBI56_RS05620 (WBI56_05620) yhxD 1087616..1088515 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WBI56_RS05625 (WBI56_05625) yhjA 1088732..1089001 (+) 270 WP_338733076.1 excalibur calcium-binding domain-containing protein -
  WBI56_RS05630 (WBI56_05630) yhjB 1089045..1090514 (-) 1470 WP_338733078.1 sodium:solute symporter -
  WBI56_RS05635 (WBI56_05635) yhjC 1090511..1090711 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WBI56_RS05640 (WBI56_05640) - 1090919..1091281 (-) 363 WP_087961168.1 hypothetical protein -
  WBI56_RS05645 (WBI56_05645) yhjE 1091433..1092056 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WBI56_RS05650 (WBI56_05650) lepB 1092058..1092564 (+) 507 WP_338733083.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=946321 WBI56_RS05615 WP_003245329.1 1086993..1087571(+) (comK) [Bacillus subtilis strain MC4-2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=946321 WBI56_RS05615 WP_003245329.1 1086993..1087571(+) (comK) [Bacillus subtilis strain MC4-2]
ATGAGTCAGAAAACAGACGCACCTTTGGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1