Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V7R92_RS10690 Genome accession   NZ_CP147490
Coordinates   2206796..2208601 (-) Length   601 a.a.
NCBI ID   WP_338757122.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain LMT1-73     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201796..2213601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R92_RS10665 - 2202392..2203291 (-) 900 WP_011668196.1 RluA family pseudouridine synthase -
  V7R92_RS10670 - 2203288..2204091 (-) 804 WP_021740943.1 NAD kinase -
  V7R92_RS10675 - 2204093..2204752 (-) 660 WP_011668198.1 GTP pyrophosphokinase family protein -
  V7R92_RS10680 - 2205079..2205717 (+) 639 WP_043022825.1 ClpXP adapter SpxH family protein -
  V7R92_RS10685 - 2205879..2206742 (+) 864 WP_338757121.1 DegV family protein -
  V7R92_RS10690 pepF 2206796..2208601 (-) 1806 WP_338757122.1 oligoendopeptidase F Regulator
  V7R92_RS10695 - 2208668..2209762 (-) 1095 WP_338757123.1 competence protein CoiA family protein -
  V7R92_RS10700 trmB 2209889..2210536 (-) 648 WP_043022829.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V7R92_RS10705 - 2210602..2211393 (-) 792 WP_043022830.1 phosphotransferase family protein -
  V7R92_RS10710 - 2211455..2212681 (-) 1227 WP_338757124.1 ABC transporter permease -
  V7R92_RS10715 - 2212678..2213412 (-) 735 WP_065201499.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 67159.16 Da        Isoelectric Point: 4.8201

>NTDB_id=946300 V7R92_RS10690 WP_338757122.1 2206796..2208601(-) (pepF) [Levilactobacillus brevis strain LMT1-73]
MKQIPKRSEVPASLTWDLTTIFPDEAAFKAAIAAIKTQTTVVAGLKGQLAQSGAALYRVTTAVFDLNRQLERVYVYASLN
NDQDTGNAAAQALMGQAESLVATVGAATAWFEPEVLALSADQLQTLIDNEPRLADYQHVFDVLGQQRAHTLSVAQEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVRLSEGLYGVLLQSTTPRVRQQAFEALYSVYQQFRHTFAATLASEVK
THNFSAETRHYASARAAAMSRNNVPAVVYDTLVETVNNHLDSLHRYVNLRKEILDLPQLHMYDLYTPITGEPSLKYTYQE
AQEMALKALAVLGPDYTANVQKMFDGRAIDVVENQGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQDAAGETLT
ADFMSDFYGKLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYATGFAAATTLSQRILSGDEAKRDAYLAYLKAGSSA
LPLDVMKQAGVDMTQPGYLQTAFATFDERLAEFTQLAYELN

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=946300 V7R92_RS10690 WP_338757122.1 2206796..2208601(-) (pepF) [Levilactobacillus brevis strain LMT1-73]
GTGAAACAAATTCCGAAACGATCAGAGGTTCCCGCATCATTGACTTGGGACCTAACAACTATTTTTCCTGACGAGGCAGC
TTTTAAGGCCGCAATTGCTGCGATTAAAACGCAAACAACGGTCGTGGCCGGTTTGAAGGGACAATTGGCCCAAAGTGGGG
CCGCGTTATATCGTGTCACGACGGCGGTATTTGATTTGAATCGCCAGTTGGAGCGGGTATACGTCTATGCGTCTTTAAAC
AATGATCAGGATACCGGCAATGCTGCAGCCCAAGCATTAATGGGGCAAGCCGAGAGTTTGGTGGCAACTGTGGGTGCGGC
CACGGCTTGGTTTGAACCTGAGGTATTGGCCTTGTCAGCGGATCAGCTGCAAACGTTGATTGATAACGAACCCCGGCTGG
CAGATTATCAGCATGTGTTTGACGTATTGGGACAGCAGCGGGCACATACGCTGTCAGTGGCGCAAGAAAAATTGTTAGCG
GGTGCTAGTGATATCTTTGGTGCGTCTGCTAAAACTTACAGCGTGCTGAGTGATGCTGATCTAAAGTTTCCAGTTGTTCA
AGACGAAGCCGGCAATGATGTGCGACTGTCAGAGGGACTGTATGGTGTTTTGCTACAATCCACAACACCACGGGTGCGGC
AGCAGGCCTTTGAAGCATTATATTCGGTTTATCAACAATTCCGACATACCTTTGCCGCAACCTTAGCGAGCGAAGTCAAA
ACGCATAATTTTAGCGCTGAGACGCGTCACTATGCGAGTGCCAGAGCGGCCGCGATGAGTCGCAACAATGTGCCAGCGGT
GGTCTATGATACCCTGGTGGAAACAGTCAATAATCATTTAGACTCACTGCATCGCTATGTTAATTTGCGCAAAGAGATTT
TGGACTTGCCGCAACTGCACATGTACGACCTGTATACGCCAATTACGGGTGAACCCAGCTTGAAATATACCTACCAAGAA
GCACAAGAGATGGCGTTAAAGGCACTAGCAGTCTTGGGACCGGATTACACTGCCAATGTTCAAAAGATGTTTGATGGCCG
GGCAATTGATGTGGTTGAAAATCAGGGTAAACGGACGGGCGCTTACTCAGGCGGGATGTATGATACTAAACCGTATATTT
TGTTGAATTGGCAAGATAGCTTGGAAAGCTTGTTCACGTTGGTTCATGAGATGGGACACAGCATGCATAGCCATTACACT
CGGACAAATCAACCGTACCAGTATGGTGATTATTCAATCTTTGTTGCGGAAATTGCCTCGACAACGAATGAAAACTTGCT
GACGGACTACCTGTTGAAAACCCAGACTGACCCCAAGGTGCGAGCTTATGTATTAAACCATTATCTGGATGGCTTTAAAG
GCACGGTATACCGCCAGACGCAGTTCGCAGAATTTGAGGACTACATTCACCAACAGGATGCCGCTGGCGAAACTCTGACG
GCTGACTTCATGAGTGATTTCTACGGCAAACTTAATCAGCGTTATTACGGTGATGGGGTGATTTCCGATCCACAAATCGC
TGATGAATGGACCCGAATTCCACATTTCTACTATGACTACTATGTGTACCAGTACGCAACCGGGTTTGCGGCGGCTACGA
CGTTATCGCAACGAATTTTGAGTGGCGACGAGGCAAAGCGGGATGCCTACTTGGCCTATCTAAAGGCGGGAAGTTCTGCC
TTACCACTTGATGTGATGAAACAAGCGGGCGTCGATATGACGCAACCGGGCTATTTGCAGACGGCTTTTGCAACGTTCGA
CGAGCGCTTGGCAGAATTCACGCAATTGGCGTATGAATTAAACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.17

0.491