Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   V6U91_RS06500 Genome accession   NZ_CP147221
Coordinates   1278111..1279079 (+) Length   322 a.a.
NCBI ID   WP_002898677.1    Uniprot ID   -
Organism   Campylobacter jejuni strain LZ-CJ     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273111..1284079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS06475 cdsA 1274021..1274746 (-) 726 WP_002866765.1 phosphatidate cytidylyltransferase -
  V6U91_RS06480 - 1274755..1275093 (-) 339 WP_002855905.1 hypothetical protein -
  V6U91_RS06485 - 1275095..1276402 (-) 1308 WP_014517085.1 NFACT family protein -
  V6U91_RS06490 mobA 1276464..1277039 (+) 576 WP_002866768.1 molybdenum cofactor guanylyltransferase -
  V6U91_RS06495 pldA 1277036..1278025 (+) 990 WP_002866769.1 phospholipase A -
  V6U91_RS06500 ceuB 1278111..1279079 (+) 969 WP_002898677.1 ABC transporter permease Machinery gene
  V6U91_RS06505 ceuC 1279072..1280010 (+) 939 WP_002866771.1 iron chelate uptake ABC transporter family permease subunit -
  V6U91_RS06510 ceuD 1280007..1280762 (+) 756 WP_002866772.1 ABC transporter ATP-binding protein -
  V6U91_RS06515 ceuB 1280775..1281767 (+) 993 WP_002866773.1 enterochelin ABC transporter substrate-binding protein CeuB -
  V6U91_RS06520 - 1281923..1282144 (+) 222 WP_002866774.1 hypothetical protein -
  V6U91_RS06525 - 1282145..1282426 (+) 282 WP_002866775.1 type II toxin-antitoxin system RelE/ParE family toxin -
  V6U91_RS06535 - 1282788..1283342 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35411.32 Da        Isoelectric Point: 9.6678

>NTDB_id=946266 V6U91_RS06500 WP_002898677.1 1278111..1279079(+) (ceuB) [Campylobacter jejuni strain LZ-CJ]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=946266 V6U91_RS06500 WP_002898677.1 1278111..1279079(+) (ceuB) [Campylobacter jejuni strain LZ-CJ]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATG
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994