Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   V6U91_RS05605 Genome accession   NZ_CP147221
Coordinates   1096814..1097764 (+) Length   316 a.a.
NCBI ID   WP_353940076.1    Uniprot ID   -
Organism   Campylobacter jejuni strain LZ-CJ     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091814..1102764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS05580 - 1092172..1093185 (-) 1014 WP_052821868.1 hypothetical protein -
  V6U91_RS05585 - 1093256..1094029 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  V6U91_RS05590 wlaTB 1094022..1094978 (+) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  V6U91_RS05595 wlaTC 1094975..1095934 (+) 960 WP_012006735.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  V6U91_RS05600 - 1095937..1096755 (-) 819 WP_014517064.1 glycosyltransferase family 2 protein -
  V6U91_RS05605 waaF 1096814..1097764 (+) 951 WP_353940076.1 lipopolysaccharide heptosyltransferase II Regulator
  V6U91_RS05610 - 1097816..1099315 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  V6U91_RS05615 - 1099463..1100440 (+) 978 WP_002866168.1 hypothetical protein -
  V6U91_RS05620 gmhA 1100444..1101004 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  V6U91_RS05625 rfaE1 1101001..1102386 (-) 1386 WP_014517065.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36368.92 Da        Isoelectric Point: 10.3102

>NTDB_id=946261 V6U91_RS05605 WP_353940076.1 1096814..1097764(+) (waaF) [Campylobacter jejuni strain LZ-CJ]
MKIFIHLPTWLGDAVMASSALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=946261 V6U91_RS05605 WP_353940076.1 1096814..1097764(+) (waaF) [Campylobacter jejuni strain LZ-CJ]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCATCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.93

99.051

0.93