Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   V6U91_RS05240 Genome accession   NZ_CP147221
Coordinates   1025395..1025697 (+) Length   100 a.a.
NCBI ID   WP_002877750.1    Uniprot ID   -
Organism   Campylobacter jejuni strain LZ-CJ     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020395..1030697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS05215 rpsR 1020757..1021017 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  V6U91_RS05220 lon 1021078..1023453 (-) 2376 WP_038402136.1 endopeptidase La -
  V6U91_RS05225 - 1023470..1024117 (-) 648 WP_012006727.1 outer membrane protein assembly factor BamD -
  V6U91_RS05230 fliW 1024278..1024667 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  V6U91_RS05235 proC 1024667..1025398 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  V6U91_RS05240 ctsT 1025395..1025697 (+) 303 WP_002877750.1 hypothetical protein Machinery gene
  V6U91_RS05245 - 1025694..1026356 (+) 663 WP_002877751.1 hypothetical protein -
  V6U91_RS05250 - 1026353..1026805 (+) 453 WP_002877757.1 hypothetical protein -
  V6U91_RS05255 hemD 1026802..1027431 (-) 630 WP_002877758.1 uroporphyrinogen-III synthase -
  V6U91_RS05260 thiE 1027409..1028041 (-) 633 WP_002877759.1 thiamine phosphate synthase -
  V6U91_RS05265 thiD 1028031..1028843 (-) 813 WP_002877760.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V6U91_RS05270 - 1028840..1029526 (-) 687 WP_002866108.1 endonuclease III domain-containing protein -
  V6U91_RS05275 - 1029523..1030284 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12138.20 Da        Isoelectric Point: 7.0039

>NTDB_id=946259 V6U91_RS05240 WP_002877750.1 1025395..1025697(+) (ctsT) [Campylobacter jejuni strain LZ-CJ]
MKKAFILIESISAITIISLIFIGIFYHYTQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFINDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=946259 V6U91_RS05240 WP_002877750.1 1025395..1025697(+) (ctsT) [Campylobacter jejuni strain LZ-CJ]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATCA
CTATACTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTATTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGTGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98