Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   V6U91_RS03255 Genome accession   NZ_CP147221
Coordinates   634534..634971 (+) Length   145 a.a.
NCBI ID   WP_283784521.1    Uniprot ID   -
Organism   Campylobacter jejuni strain LZ-CJ     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629534..639971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS03235 kdpD 630022..631953 (+) 1932 WP_002877682.1 sensor histidine kinase KdpD -
  V6U91_RS03240 uvrB 631948..633921 (-) 1974 WP_014516973.1 excinuclease ABC subunit UvrB -
  V6U91_RS03245 - 634075..634305 (+) 231 WP_002852327.1 hypothetical protein -
  V6U91_RS03250 - 634295..634537 (+) 243 WP_002854947.1 hypothetical protein -
  V6U91_RS03255 Cj0683 634534..634971 (+) 438 WP_283784521.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  V6U91_RS03260 priA 634953..636806 (+) 1854 WP_002877679.1 primosomal protein N' -
  V6U91_RS03265 - 636799..637557 (-) 759 WP_002877674.1 CTP:phosphoglutamine cytidylyltransferase -
  V6U91_RS03270 - 637559..638161 (-) 603 WP_002877673.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16747.73 Da        Isoelectric Point: 8.0993

>NTDB_id=946256 V6U91_RS03255 WP_283784521.1 634534..634971(+) (Cj0683) [Campylobacter jejuni strain LZ-CJ]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKIDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=946256 V6U91_RS03255 WP_283784521.1 634534..634971(+) (Cj0683) [Campylobacter jejuni strain LZ-CJ]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATAGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993