Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACFWQH_RS09510 Genome accession   NZ_CP171272
Coordinates   2002770..2003099 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain W221205R     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997770..2008099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFWQH_RS09495 (ACFWQH_09495) - 1998385..1999347 (+) 963 WP_043486908.1 SDR family oxidoreductase -
  ACFWQH_RS09500 (ACFWQH_09500) - 1999347..2000384 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  ACFWQH_RS09505 (ACFWQH_09505) - 2000582..2002579 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACFWQH_RS09510 (ACFWQH_09510) comEA/comE1 2002770..2003099 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  ACFWQH_RS09520 (ACFWQH_09520) - 2003316..2004512 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACFWQH_RS09525 (ACFWQH_09525) uvrB 2004700..2006712 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=946089 ACFWQH_RS09510 WP_003138486.1 2002770..2003099(+) (comEA/comE1) [Pseudomonas aeruginosa strain W221205R]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=946089 ACFWQH_RS09510 WP_003138486.1 2002770..2003099(+) (comEA/comE1) [Pseudomonas aeruginosa strain W221205R]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385