Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R9A04_RS05815 Genome accession   NZ_AP028402
Coordinates   1112008..1112556 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11531     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1107008..1117556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A04_RS05780 (B11531_11370) - 1107197..1107622 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R9A04_RS05785 (B11531_11380) - 1107686..1108307 (+) 622 Protein_1115 NAD(P)H-dependent oxidoreductase -
  R9A04_RS05790 (B11531_11390) - 1108307..1108912 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  R9A04_RS05795 (B11531_11400) pgsA 1109037..1109573 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R9A04_RS05800 (B11531_11410) rseP 1109570..1110676 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  R9A04_RS05805 (B11531_11420) - 1110669..1111535 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  R9A04_RS05810 (B11531_11430) rpsF 1111622..1111999 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  R9A04_RS05815 (B11531_11440) ssb 1112008..1112556 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  R9A04_RS05820 (B11531_11450) rpsR 1112567..1112827 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R9A04_RS05825 (B11531_11460) lon 1112887..1115262 (-) 2376 WP_317729642.1 endopeptidase La -
  R9A04_RS05830 (B11531_11470) - 1115279..1115926 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  R9A04_RS05835 (B11531_11480) fliW 1116087..1116476 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R9A04_RS05840 (B11531_11490) proC 1116476..1117207 (+) 732 WP_002854026.1 pyrroline-5-carboxylate reductase Machinery gene
  R9A04_RS05845 (B11531_11500) ctsT 1117204..1117506 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=94604 R9A04_RS05815 WP_002854048.1 1112008..1112556(+) (ssb) [Campylobacter jejuni strain BCH-11531]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=94604 R9A04_RS05815 WP_002854048.1 1112008..1112556(+) (ssb) [Campylobacter jejuni strain BCH-11531]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39

Multiple sequence alignment