Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   ACFVPM_RS10465 Genome accession   NZ_CP171271
Coordinates   2210401..2210757 (+) Length   118 a.a.
NCBI ID   WP_250719105.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain W220606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2205401..2215757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVPM_RS10440 fabF 2205613..2206857 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  ACFVPM_RS10445 pabC 2206857..2207672 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  ACFVPM_RS10450 mltG 2207678..2208727 (+) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  ACFVPM_RS10455 tmk 2208756..2209388 (+) 633 WP_023517788.1 dTMP kinase -
  ACFVPM_RS10460 - 2209381..2210367 (+) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  ACFVPM_RS10465 pilZ 2210401..2210757 (+) 357 WP_250719105.1 PilZ domain-containing protein Machinery gene
  ACFVPM_RS10470 - 2210772..2211548 (+) 777 WP_003091117.1 TatD family hydrolase -
  ACFVPM_RS10475 - 2211774..2212907 (-) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  ACFVPM_RS10480 - 2212993..2213631 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  ACFVPM_RS10485 - 2213781..2214677 (+) 897 WP_023517787.1 radical SAM protein -
  ACFVPM_RS10490 - 2214742..2215374 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12962.02 Da        Isoelectric Point: 9.7572

>NTDB_id=945995 ACFVPM_RS10465 WP_250719105.1 2210401..2210757(+) (pilZ) [Pseudomonas aeruginosa strain W220606]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIDVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=945995 ACFVPM_RS10465 WP_250719105.1 2210401..2210757(+) (pilZ) [Pseudomonas aeruginosa strain W220606]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGACGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

48.148

91.525

0.441
  pilZ Legionella pneumophila strain ERS1305867

48.148

91.525

0.441