Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACFVPM_RS09510 Genome accession   NZ_CP171271
Coordinates   2002778..2003107 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain W220606     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1997778..2008107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVPM_RS09495 - 1998395..1999357 (+) 963 WP_043486908.1 SDR family oxidoreductase -
  ACFVPM_RS09500 - 1999357..2000392 (+) 1036 Protein_1883 glycosyltransferase family 4 protein -
  ACFVPM_RS09505 - 2000590..2002587 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACFVPM_RS09510 comEA/comE1 2002778..2003107 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  ACFVPM_RS09520 - 2003324..2004520 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACFVPM_RS09525 uvrB 2004708..2006720 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=945987 ACFVPM_RS09510 WP_003138486.1 2002778..2003107(+) (comEA/comE1) [Pseudomonas aeruginosa strain W220606]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=945987 ACFVPM_RS09510 WP_003138486.1 2002778..2003107(+) (comEA/comE1) [Pseudomonas aeruginosa strain W220606]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385