Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACFVPM_RS02095 Genome accession   NZ_CP171271
Coordinates   445816..446181 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain W220606     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 440816..451181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVPM_RS02065 pyrR 441438..441950 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ACFVPM_RS02070 ruvX 442062..442496 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ACFVPM_RS02075 - 442496..443065 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  ACFVPM_RS02080 - 443114..444007 (-) 894 WP_023518289.1 energy transducer TonB -
  ACFVPM_RS02085 gshB 444154..445107 (-) 954 WP_023518290.1 glutathione synthase -
  ACFVPM_RS02090 pilG 445362..445769 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ACFVPM_RS02095 pilH 445816..446181 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ACFVPM_RS02100 - 446232..446768 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ACFVPM_RS02105 pilJ 446853..448901 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ACFVPM_RS02110 pilK 448962..449837 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=945970 ACFVPM_RS02095 WP_003084587.1 445816..446181(+) (pilH) [Pseudomonas aeruginosa strain W220606]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=945970 ACFVPM_RS02095 WP_003084587.1 445816..446181(+) (pilH) [Pseudomonas aeruginosa strain W220606]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364