Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACFX5S_RS24100 Genome accession   NZ_CP171242
Coordinates   4996969..4997937 (-) Length   322 a.a.
NCBI ID   WP_077634768.1    Uniprot ID   -
Organism   Escherichia coli Nissle 1917     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4991969..5002937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFX5S_RS24085 (ACFX5S_24080) yieP 4993584..4994276 (+) 693 WP_001131161.1 FadR/GntR family transcriptional regulator -
  ACFX5S_RS24090 (ACFX5S_24085) mdtD 4994299..4995726 (+) 1428 WP_001280828.1 multidrug transporter subunit MdtD -
  ACFX5S_RS24095 (ACFX5S_24090) - 4995743..4996912 (-) 1170 Protein_4704 IS3-like element ISEc52 family transposase -
  ACFX5S_RS24100 (ACFX5S_24095) cytR 4996969..4997937 (-) 969 WP_077634768.1 ribose operon transcriptional repressor RbsR Regulator
  ACFX5S_RS24105 (ACFX5S_24100) rbsK 4997941..4998870 (-) 930 WP_001361088.1 ribokinase -
  ACFX5S_RS24110 (ACFX5S_24105) rbsB 4998996..4999886 (-) 891 WP_001297966.1 ribose ABC transporter substrate-binding protein RbsB -
  ACFX5S_RS24115 (ACFX5S_24110) rbsC 4999911..5000876 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACFX5S_RS24120 (ACFX5S_24115) rbsA 5000881..5002386 (-) 1506 WP_000387762.1 ribose ABC transporter ATP-binding protein RbsA -
  ACFX5S_RS24125 (ACFX5S_24120) rbsD 5002394..5002813 (-) 420 WP_001346607.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35838.94 Da        Isoelectric Point: 5.0626

>NTDB_id=945960 ACFX5S_RS24100 WP_077634768.1 4996969..4997937(-) (cytR) [Escherichia coli Nissle 1917]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRFEV
VY

Nucleotide


Download         Length: 969 bp        

>NTDB_id=945960 ACFX5S_RS24100 WP_077634768.1 4996969..4997937(-) (cytR) [Escherichia coli Nissle 1917]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCTGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTTGAAGTG
GTTTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

39.088

95.342

0.373
  cytR Vibrio parahaemolyticus RIMD 2210633

37.987

95.652

0.363